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3
votes
5
replies
431
views
Tutorial for analyzing WGBS data
NGS methylseq WGBS
6 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
431
views
Comment: Comment: Tutorial for analyzing WGBS data
6 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
431
views
Comment: Comment: Tutorial for analyzing WGBS data
6 weeks ago by pt.taklifi ▴ 60
0
votes
0
replies
431
views
Comment: Comment: Tutorial for analyzing WGBS data
6 weeks ago by pt.taklifi ▴ 60
1
vote
1
reply
194
views
is there a tool to recover corrupted fastq files
fastq short-read
updated 9 weeks ago by 43k • written 9 weeks ago by ▴ 60
0
votes
2
replies
871
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 2.5 years ago by ▴ 80 • written 2.8 years ago by ▴ 60
0
votes
0
replies
722
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names r ngs annotate
2.8 years ago by pt.taklifi ▴ 60
0
votes
0
replies
972
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
2.9 years ago by pt.taklifi ▴ 60
1
vote
4
replies
972
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression TCGA RTCAG
2.9 years ago by pt.taklifi ▴ 60
0
votes
0
replies
972
views
Comment: Comment: gene expression for a specific gene across for multiple cancer types in TCGA dat
2.9 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.3k
views
Comment: Comment: ATACseq batch effect coupled with biological effect
3.0 years ago by pt.taklifi ▴ 60
1
vote
3
replies
1.3k
views
ATACseq batch effect coupled with biological effect
batch-effect ATAC-seq
updated 10 months ago by 43k • written 3.0 years ago by ▴ 60
0
votes
0
replies
5.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
0
votes
1
reply
5.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
0
votes
0
replies
5.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
3.0 years ago by pt.taklifi ▴ 60
7
votes
5
replies
5.1k
views
How to create SAF from text file for FeatureCounts
featureCounts ATAC-seq
updated 10 months ago by 43k • written 3.0 years ago by ▴ 60
0
votes
0
replies
2.8k
views
Comment: Comment: get count matrix from bam files
3.0 years ago by pt.taklifi ▴ 60
2
votes
2
replies
2.8k
views
get count matrix from bam files
bam ATAC-seq
updated 10 months ago by 43k • written 3.0 years ago by ▴ 60
0
votes
0
replies
1.5k
views
how to get feature importance after SVM
high_dimensional SVM R
3.0 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.3k
views
Comment: Comment: How to implement k fold cv after randomForest
3.0 years ago by pt.taklifi ▴ 60
1
vote
2
replies
1.3k
views
How to implement k fold cv after randomForest
k_fold_cv R randomForest
3.0 years ago by pt.taklifi ▴ 60
2
votes
3
replies
718
views
How to remove repeats on galaxy
alignment repeats galaxy
updated 3.1 years ago by 20 • written 3.3 years ago by ▴ 60
0
votes
1
reply
897
views
Comment: C: how to select features for high dimension data?
3.1 years ago by pt.taklifi ▴ 60
1
vote
1
reply
758
views
how to determine low quality variants in vcf files
vcf variant_depth
3.1 years ago by pt.taklifi ▴ 60
0
votes
0
replies
2.9k
views
Comment: C: Merge bigwig Files with different intervals
3.1 years ago by pt.taklifi ▴ 60
1
vote
9
replies
2.9k
views
Merge bigwig Files with different intervals
bigwig Merge
3.1 years ago by pt.taklifi ▴ 60
2
votes
1
reply
1.9k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig bedGraph
updated 3.1 years ago by 82k • written 3.1 years ago by ▴ 60
0
votes
1
reply
2.9k
views
Comment: C: Merge bigwig Files with different intervals
3.1 years ago by pt.taklifi ▴ 60
4
votes
6
replies
7.5k
views
how to remove duplicates with picard
alignment deduplication
updated 3.2 years ago by 161k • written 3.2 years ago by ▴ 60
0
votes
0
replies
7.5k
views
Comment: C: how to remove duplicates with picard
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
7.5k
views
Comment: C: how to remove duplicates with picard
3.2 years ago by pt.taklifi ▴ 60
2
votes
1
reply
1.0k
views
samtools index error
alignment
updated 3.2 years ago by 161k • written 3.2 years ago by ▴ 60
8
votes
3
replies
897
views
how to select features for high dimension data?
machine-learning
updated 5 months ago by 43k • written 3.2 years ago by ▴ 60
7
votes
6
replies
1.8k
views
nohup with while loop
bash loop SRAtoolkit
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: nohup with while loop
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
1.8k
views
Comment: C: nohup with while loop
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
889
views
Comment: C: error with bowtie2 alignment
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
889
views
Comment: C: error with bowtie2 alignment
3.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
889
views
Comment: C: error with bowtie2 alignment
3.2 years ago by pt.taklifi ▴ 60
2
votes
6
replies
889
views
error with bowtie2 alignment
alignment error sequencing
3.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.2k
views
Comment: C: bcftools variant calling
3.2 years ago by pt.taklifi ▴ 60
0
votes
0
replies
691
views
Comment: C: sum of values in a column
3.2 years ago by pt.taklifi ▴ 60
0
votes
1
reply
691
views
Comment: C: sum of values in a column
3.2 years ago by pt.taklifi ▴ 60
4
votes
5
replies
691
views
sum of values in a column
r
3.2 years ago by pt.taklifi ▴ 60
3
votes
3
replies
1.4k
views
remove mitochondrial reads using Bowtie2
alignment
updated 3.2 years ago by ★ 5.1k • written 3.2 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: bigwigs to reads in peaks
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: bigwigs to reads in peaks
3.3 years ago by pt.taklifi ▴ 60
0
votes
5
replies
1.3k
views
bigwigs to reads in peaks
R atac-seq
updated 10 months ago by 43k • written 3.3 years ago by ▴ 60
0
votes
0
replies
5.0k
views
Comment: C: how to resolve "command not found " error on macOS
3.3 years ago by pt.taklifi ▴ 60
0
votes
1
reply
5.0k
views
Comment: C: how to resolve "command not found " error on macOS
3.3 years ago by pt.taklifi ▴ 60
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