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How to identify hub genes in Cytoscape from a WGCNA output?
wgcna cytoscape
updated 3 months ago by 43k • written 3 months ago by ▴ 50
2
votes
7
replies
6.0k
views
error in downloading of some accesions with fastq-dump
fastq-dump
updated 14 months ago by • 0 • written 23 months ago by ▴ 50
1
vote
2
replies
532
views
I would like to add a tag to all my fasta files
linux shell
18 months ago by pavelasquezv ▴ 50
7
votes
8
replies
1.5k
views
How can I do an inner_join with multiple .csv files on the linux command line?
linux inner_join
22 months ago by pavelasquezv ▴ 50
4
votes
8
replies
1.5k
views
The BBduk.sh removed the total of my sequences!
bbduk RNA-seq
22 months ago by pavelasquezv ▴ 50
0
votes
0
replies
673
views
Can I use a CDS file to build kallisto transcriptome index?
TPM kallisto RNA-seq
22 months ago by pavelasquezv ▴ 50
5
votes
9
replies
3.2k
views
How to get TPM values from the STAR output?
values RNAseq TPM STAR
22 months ago by pavelasquezv ▴ 50
3
votes
6
replies
2.2k
views
How to use kallisto correctly?
kallisto RNA-seq
22 months ago by pavelasquezv ▴ 50
5
votes
6
replies
1.7k
views
How can I biuld to pipeline in nextflow to download SRA files?
nextflow
22 months ago by pavelasquezv ▴ 50
5
votes
12
replies
1.7k
views
How to perform quality control on multiple folders using trimmomatic?
trimmomatic
22 months ago by pavelasquezv ▴ 50
7
votes
16
replies
1.9k
views
The STAR program does not work after the mapping
STAR
updated 22 months ago by 142k • written 22 months ago by ▴ 50
4
votes
3
replies
662
views
What is the best tool to do a dot-plot alignment of two chromosomes?
dot-plot
23 months ago by pavelasquezv ▴ 50
2
votes
2
replies
573
views
I need to perform a sum with values from several outputs of a program
loop
23 months ago by pavelasquezv ▴ 50
2
votes
2
replies
1.6k
views
bad file format in HMM file
hmmpress hmmer
2.6 years ago by pavelasquezv ▴ 50
0
votes
5
replies
1.1k
views
how can I run the catastrophy program?
linux catastrophy
2.7 years ago by pavelasquezv ▴ 50
5
votes
3
replies
2.6k
views
How to loop to use trimmomatic for multiple fastq files?
linux trimmomatic
updated 2.8 years ago by ▴ 460 • written 2.8 years ago by ▴ 50
0
votes
0
replies
447
views
What is the best workflow to analyse RT-qPCR ('Real-Time quantitative PCR') data using R packages?
RT-qPCR R
2.9 years ago by pavelasquezv ▴ 50
0
votes
0
replies
1.5k
views
I can not get fasta file with the hit sequences running barrnap
barrnap bed
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 50
4
votes
6
replies
1.6k
views
How can I solve the following error? No module named commons.core.LoggerFactory
python
3.1 years ago by pavelasquezv ▴ 50
1
vote
2
replies
999
views
How can I get GTF file for TE annotations from Helicoverpa armigera?
genome workflow database pipeline
3.2 years ago by pavelasquezv ▴ 50
1
vote
2
replies
795
views
I need to retrieve the genomic locations of all genes in the given read count matrix
RNAseq annotation TEffectR r
3.2 years ago by pavelasquezv ▴ 50
2
votes
3
replies
2.9k
views
featureCounts - ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file
genome annotation database alignment
updated 3.2 years ago by 21k • written 3.2 years ago by ▴ 50
5
votes
5
replies
1.8k
views
How can I create a count matrix?
dna workflow genome database gene
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 50
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