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What is the best tool to do a dot-plot alignment of two chromosomes?

Hi all,

What is the best tool to do a dot-plot alignment of two chromosomes? I would be happy if you gave me some tips.

Many thanks,

All the best Alex

dot-plot
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written by pavelasquezv • pavelasquezv

2 answers

https://mummer4.github.io/tutorial/tutorial.html

• 0 views • link
written by GenoMax GenoMax

personally I also like:

D-Genies : http://dgenies.toulouse.inra.fr/

minidot: https://github.com/thackl/minidot

• 0 views • link
written by lieven.sterck lieven.sterck

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