Mutual Information in Nucleic Acid Seqs
Hi all,
I am looking for a software tool that would be able to do a mutual information analysis on an alignment of DNA sequences from an HTS sequencing (~ 100K unique seqs) to see which NTs might be interacting. I found MatrixPlot and CorreLogo, but they both seem to be able to process only two seqs at a time. Do you guys have any suggestions of what I could use? Many thanks!
Katka
• 1,090 views
•
link
written
by
KaterinaS •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Aligning short reads using STAR
written by bm.nina •
-
Whole genome sequencing and RNA sequencing data analysis for a bacterial strain
written by salmon •
-
Unrecognized Sequence in NGS reads
written by jer364 •
-
Distinguish Single Cell DNA Sequencing: Human vs Mouse
written by ResearchR
-
Basics about sequencing/alignment and variant calling
written by ernestrv0101 •
-
How to map BAM/SAM files to genes with abundance levels?
written by dr.genetics
-
Mapping target bisulfite sequencing reads to a reference
written by tomasz.jurkowski •
-
DNA-seq PE150 BWA alignment
written by zhuozhu132 •
-
consensus sequence from MSA using seqAn
written by Zev.Kronenberg
-
Publication Quality, Cross-Platform, Alignment Visualization Tools
written by jth
A great place to start with is Marks lab homepage: https://marks.hms.harvard.edu/