Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
146
views
How can one determine if a sample size is representative in scRNA-seq analysis?
scRNA-seq
8 weeks ago by fifty_fifty ▴ 60
0
votes
0
replies
459
views
Comment: Comment: Find Large-scale CNVs in whole exome sequencing
12 weeks ago by fifty_fifty ▴ 60
0
votes
0
replies
459
views
Comment: Comment: Find Large-scale CNVs in whole exome sequencing
12 weeks ago by fifty_fifty ▴ 60
0
votes
1
reply
459
views
Comment: Comment: Find Large-scale CNVs in whole exome sequencing
12 weeks ago by fifty_fifty ▴ 60
0
votes
6
replies
459
views
Find Large-scale CNVs in whole exome sequencing
WES scRNA-seq CNV
12 weeks ago by fifty_fifty ▴ 60
0
votes
1
reply
581
views
Transfer harmony-integrated scRNA-seq data to scanpy
scRNA-seq harmony
updated 7 months ago by ▴ 90 • written 7 months ago by ▴ 60
0
votes
0
replies
683
views
Comment: Comment: Subclustering of intergated cells from scRNA-seq data
7 months ago by fifty_fifty ▴ 60
2
votes
4
replies
683
views
Subclustering of intergated cells from scRNA-seq data
scRNA-seq Seurat
7 months ago by fifty_fifty ▴ 60
2
votes
5
replies
1.4k
views
How to distinguish between normal and malignant epithelial cells based on CNV?
scRNA-seq r CNV infercnv CNA
updated 7 months ago by 3.9k • written 8 months ago by ▴ 60
1
vote
1
reply
1.4k
views
Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
8 months ago by fifty_fifty ▴ 60
0
votes
1
reply
1.4k
views
Comment: Comment: How to distinguish between normal and malignant epithelial cells based on CNV?
8 months ago by fifty_fifty ▴ 60
0
votes
0
replies
2.4k
views
Comment: Comment: InferCNV results interpretation
8 months ago by fifty_fifty ▴ 60
1
vote
5
replies
2.4k
views
InferCNV results interpretation
cnv scrna-seq r
updated 12 weeks ago by • 0 • written 8 months ago by ▴ 60
0
votes
0
replies
775
views
Comment: Comment: Lollipop visualization of VCF (SnpEff output)
10 months ago by fifty_fifty ▴ 60
0
votes
3
replies
775
views
Lollipop visualization of VCF (SnpEff output)
snpEff SNP WES
updated 10 months ago by 161k • written 10 months ago by ▴ 60
0
votes
0
replies
436
views
snpEff error. No CDS checked
snpEff gtf WES
11 months ago by fifty_fifty ▴ 60
0
votes
2
replies
590
views
Variant calling in WES vs WGS
snpEff WGS SNPs WES
updated 11 months ago by ▴ 280 • written 11 months ago by ▴ 60
7
votes
5
replies
1.1k
views
RNA-seq analysis without replicates
DGE RNA-seq GSEA
updated 13 months ago by ▴ 120 • written 13 months ago by ▴ 60
0
votes
1
reply
557
views
Does it make sense to analyze snRNA-seq data with low nUMI per gene?
scRNA-seq
updated 20 months ago by ▴ 800 • written 20 months ago by ▴ 60
2
votes
2
replies
595
views
find pairwise transcriptional similarities between samples
RNA-seq r
updated 23 months ago by 54k • written 23 months ago by ▴ 60
0
votes
0
replies
348
views
scRNA-seq benchmark data
scRNA_seq
23 months ago by fifty_fifty ▴ 60
1
vote
3
replies
683
views
Aggregation of bulk RNA-seq
RNA-seq
updated 24 months ago by ▴ 790 • written 24 months ago by ▴ 60
0
votes
1
reply
811
views
Comment: Comment: evaluation of Seurat clustering
2.1 years ago by fifty_fifty ▴ 60
0
votes
3
replies
811
views
evaluation of Seurat clustering
scRNA-seq PCA Seurat
updated 2.1 years ago by 11k • written 2.1 years ago by ▴ 60
1
vote
1
reply
1.6k
views
How to refer to gene names in Seurat::PercentageFeatureSet()?
r seurat scRNA-seq
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 60
1
vote
7
replies
2.3k
views
6 follow
Can't convert dog ensembl IDs into gene names
RNA-seq dog ensembl biomart
updated 2.4 years ago by ▴ 100 • written 2.4 years ago by ▴ 60
0
votes
1
reply
2.7k
views
how to read h5 file in Seurat if its structure is not like 10x h5 file structure?
RNA-Seq single-cell scRNA-seq Seurat R
updated 8 months ago by 43k • written 2.4 years ago by ▴ 60
0
votes
0
replies
444
views
Is it ok to use z-scores means for inter-sample comparison?
scRNA_seq RNA-seq
2.6 years ago by fifty_fifty ▴ 60
2
votes
2
replies
1.4k
views
GEO submission when I have raw data in SRA
GEO SRA scRNA-seq NCBI data
updated 2.7 years ago by 8.7k • written 2.7 years ago by ▴ 60
0
votes
0
replies
698
views
RNA-seq raw counts normalization for survival analysis
survival tcga RNA-Seq r
2.8 years ago by fifty_fifty ▴ 60
0
votes
1
reply
1.0k
views
Comment: Comment: Integration of two TCGA datasets
2.8 years ago by fifty_fifty ▴ 60
0
votes
1
reply
1.0k
views
Comment: Comment: Integration of two TCGA datasets
2.8 years ago by fifty_fifty ▴ 60
3
votes
5
replies
1.0k
views
Integration of two TCGA datasets
r RNA-Seq tcga survival
updated 2.8 years ago by 87k • written 2.8 years ago by ▴ 60
2
votes
5
replies
3.1k
views
How to use DEGs file for GSEA?
gsea RNA-Seq scRNA-seq Seurat
updated 2.9 years ago by • 0 • written 3.3 years ago by ▴ 60
0
votes
0
replies
1.8k
views
Comment: Comment: biomart returns several ensembl ids for one gene
3.0 years ago by fifty_fifty ▴ 60
0
votes
1
reply
1.8k
views
Comment: Comment: biomart returns several ensembl ids for one gene
3.0 years ago by fifty_fifty ▴ 60
0
votes
4
replies
1.8k
views
biomart returns several ensembl ids for one gene
scrna-seq ensembl biomart r
3.0 years ago by fifty_fifty ▴ 60
1
vote
0
replies
448
views
The best way to find cell differentiation path
differentiation fate biology fibroblasts scRNA-seq
3.0 years ago by fifty_fifty ▴ 60
0
votes
0
replies
3.1k
views
Comment: C: How to use DEGs file for GSEA?
3.3 years ago by fifty_fifty ▴ 60
0
votes
1
reply
3.1k
views
Comment: C: How to use DEGs file for GSEA?
3.3 years ago by fifty_fifty ▴ 60
0
votes
0
replies
2.8k
views
Reading count martix in scanpy
python scanpy scrna-seq seurat
3.4 years ago by fifty_fifty ▴ 60
0
votes
0
replies
1.4k
views
Answer: A: Merging previously merged object in Seurat
3.4 years ago by fifty_fifty ▴ 60
1
vote
1
reply
1.4k
views
Merging previously merged object in Seurat
scRNA-seq Seurat single-cell R RNA-Seq
3.4 years ago by fifty_fifty ▴ 60
0
votes
0
replies
2.6k
views
Comment: C: Survival analysis based on a set of genes for TCGA data
3.5 years ago by fifty_fifty ▴ 60
5
votes
3
replies
2.6k
views
Survival analysis based on a set of genes for TCGA data
tcga r RNA-Seq survival
updated 22 months ago by • 0 • written 3.5 years ago by ▴ 60
3
votes
5
replies
2.5k
views
Filter out mouse reads from single cell RNA-seq of PDX tumor
RNA-Seq PDX
updated 3.8 years ago by ▴ 10 • written 3.9 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Filtering out mouse cells based on mouse/human genes ratio
RNA-Seq scRNAseq 10x cellranger
3.8 years ago by fifty_fifty ▴ 60
0
votes
0
replies
1.6k
views
Comment: C: Mapping reads to combined mouse and human genome
3.8 years ago by fifty_fifty ▴ 60
2
votes
2
replies
1.6k
views
Mapping reads to combined mouse and human genome
RNA-Seq alignment STAR rna-seq
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 60
0
votes
0
replies
2.5k
views
Comment: C: Filter out mouse reads from single cell RNA-seq of PDX tumor
3.8 years ago by fifty_fifty ▴ 60
59 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6