snpEff error. No CDS checked
I am building a database for genome annotation of dogs' WES. I follow snpEff instructions from here My gtf, fasta, cds files are all from the same source here However, in Step 3 (checking database) I get an error that transcript IDs from the database (sample) 'XM_038535084.1' do not match any IDs from the fasta file '1_cds_XP_038396667'.
I wonder if I should rename the IDs from the CDS file just removing '1_cds_' part. Or might the issue be in something else?
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rwherman13 •
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fifty_fifty •
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fifty_fifty •
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Did you find a solution to this? I have the same issue.