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3
votes
5
replies
3.9k
views
Split VCF into separate VCFs by SNP count
vcf bcftools next-gen
written 3.1 years ago by ▴ 20
0
votes
0
replies
846
views
Comment: Comment: Calculate GQ for samples VCF
updated 2.3 years ago by 161k • written 2.3 years ago by ▴ 20
0
votes
2
replies
846
views
Calculate GQ for samples VCF
freebayes Linux VCF GATK
updated 2.3 years ago by 161k • written 2.3 years ago by ▴ 20
0
votes
0
replies
3.2k
views
Comment: Comment: miRDeep2 whitespaces error
2.6 years ago by timothy.delory ▴ 20
0
votes
0
replies
818
views
HaplotypeCaller Memory Optimization
calling GATK HPC variant
2.6 years ago by timothy.delory ▴ 20
0
votes
0
replies
668
views
Comment: Comment: Combine haploid fastq's into diploid "individuals"
2.8 years ago by timothy.delory ▴ 20
0
votes
2
replies
668
views
Combine haploid fastq's into diploid "individuals"
GATK pop-gen haplodiploid
2.8 years ago by timothy.delory ▴ 20
0
votes
1
reply
973
views
Comment: Comment: filtering repetitive regions with low quality/no snps in a vcf file
2.8 years ago by timothy.delory ▴ 20
0
votes
0
replies
833
views
Comment: Comment: Make info tag separate column VCF
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 20
0
votes
2
replies
833
views
Make info tag separate column VCF
vcf ANGSD
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 20
0
votes
0
replies
608
views
Watterson Estimate VCFs with different coverage
software vcf popgen
3.0 years ago by timothy.delory ▴ 20
0
votes
0
replies
670
views
Artificially high rho outputs from LDHat
rho VCF LDHat popgen
3.1 years ago by timothy.delory ▴ 20
0
votes
0
replies
3.9k
views
Comment: Comment: Split VCF into separate VCFs by SNP count
3.1 years ago by timothy.delory ▴ 20
0
votes
1
reply
2.6k
views
Comment: Comment: Problems in running LDHAT
3.1 years ago by timothy.delory ▴ 20
0
votes
0
replies
843
views
Comment: C: Allow for failed wildcards in Snakemake workflow
3.1 years ago by timothy.delory ▴ 20
0
votes
1
reply
1.3k
views
How do I organize snakemake when not all jobs successfully output files from previous rule?
snakemake workflow python
3.2 years ago by timothy.delory ▴ 20
0
votes
0
replies
492
views
Population Genetics WGS: how do I know if I have too few individuals?
wgs sequencing next-gen
3.2 years ago by timothy.delory ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Understanding Resource Job Allocation
3.2 years ago by timothy.delory ▴ 20
3
votes
2
replies
1.5k
views
Understanding Resource Job Allocation
snakemake slurm memory workflow
updated 3.2 years ago by 19k • written 3.2 years ago by ▴ 20
0
votes
0
replies
793
views
LD Complete lookup table problem
LD Pop_Gen LDhat
3.5 years ago by timothy.delory ▴ 20
0
votes
1
reply
1.2k
views
Comment: A: GATK AnalyzeCovariates No improvement/Sequencing Bias Removal
updated 3.8 years ago by 142k • written 3.8 years ago by ▴ 20
1
vote
3
replies
1.2k
views
GATK AnalyzeCovariates No improvement/Sequencing Bias Removal
GATK BQSR
3.8 years ago by timothy.delory ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: Snakemake Error (incorrect wildcard use)
4.1 years ago by timothy.delory ▴ 20
2
votes
3
replies
2.7k
views
Snakemake Error (incorrect wildcard use)
snakemake software error
4.1 years ago by timothy.delory ▴ 20
24 results • Page 1 of 1
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