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0
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585
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Why ABSOLUTE calculate CCF=NA?
ABSOLUTE
3.1 years ago by Laven9 • 0
0
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0
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4.0k
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Comment: C: Which Driver-Gene Detecting Software Supports hg38?
3.2 years ago by Laven9 • 0
0
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0
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791
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Comment: C: error when running "SeuratToExpressionSet"
3.2 years ago by Laven9 • 0
0
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2
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791
views
error when running "SeuratToExpressionSet"
SeuratToExpressionSet Seurat
3.2 years ago by Laven9 • 0
0
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1
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4.4k
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Comment: C: Set.seed in Seurat
3.5 years ago by Laven9 • 0
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4
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4.4k
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Set.seed in Seurat
Seurat
updated 14 months ago by 44k • written 3.5 years ago by • 0
4
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3
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957
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Strange plots I got from R studio
R
3.6 years ago by Laven9 • 0
0
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3
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2.3k
views
ERROR running annovar with cosmic90
annovar cosmic
updated 4.6 years ago by ▴ 30 • written 4.6 years ago by • 0
0
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0
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849
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How to interpret ABSOLUTE output?
ABSOLUTE
4.6 years ago by Laven9 • 0
0
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0
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2.3k
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Comment: A: A question on GetPileupSummaries (GATK)
4.6 years ago by Laven9 • 0
0
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2
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2.3k
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A question on GetPileupSummaries (GATK)
GetPileupSummaries
4.6 years ago by Laven9 • 0
0
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0
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3.2k
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Comment: A: A question on GenomicsDBImport (GATK)
updated 4.7 years ago by 142k • written 4.7 years ago by • 0
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0
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3.2k
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Comment: A: A question on GenomicsDBImport (GATK)
4.7 years ago by Laven9 • 0
0
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4
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3.2k
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A question on GenomicsDBImport (GATK)
GenomicsDBImport
4.7 years ago by Laven9 • 0
2
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3
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1.9k
views
Can Mutect2 be used for paper?
gatk Mutect2
updated 4.8 years ago by 11k • written 4.8 years ago by • 0
0
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0
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1.9k
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Comment: C: Can Mutect2 be used for paper?
4.8 years ago by Laven9 • 0
0
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0
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766
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Comment: C: What tools could be used for false positive filtering of somatic variants called
4.8 years ago by Laven9 • 0
0
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1
reply
766
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What tools could be used for false positive filtering of somatic variants called? And how do they work?
next-gen
updated 4.8 years ago by 16k • written 4.8 years ago by • 0
0
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0
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945
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Comment: C: A small detail when use VEP
4.9 years ago by Laven9 • 0
1
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2
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945
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A small detail when use VEP
VEP
updated 4.9 years ago by 47k • written 4.9 years ago by • 0
0
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0
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1.9k
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Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
0
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1
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1.9k
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Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
0
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1
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1.9k
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Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
1
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13
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1.9k
views
How long will bam-readcount take to run human samples?
bam-readcounts
updated 4.9 years ago by 82k • written 4.9 years ago by • 0
0
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0
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1.9k
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Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
0
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0
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1.9k
views
Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
0
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1
reply
1.9k
views
Comment: C: How long will bam-readcount take to run human samples?
4.9 years ago by Laven9 • 0
0
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1
reply
1.5k
views
How to interpret the output of gatk?
gatk mutect2 vcf2maf
updated 4.9 years ago by ▴ 80 • written 4.9 years ago by • 0
0
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0
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722
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Comment: C: Is there any frequently-used signature database?
5.0 years ago by Laven9 • 0
0
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2
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722
views
Is there any frequently-used signature database?
signature human cancer
updated 5.0 years ago by 19k • written 5.0 years ago by • 0
0
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1
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3.1k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.1 years ago by Laven9 • 0
0
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10
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3.1k
views
CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_mean" with "log2"?
CNV CNVkit Seg_mean
updated 5.1 years ago by ★ 2.8k • written 5.3 years ago by • 0
0
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1
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3.1k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.1 years ago by Laven9 • 0
0
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0
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683
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How can I check my title of reads added by BWA mem -R?
WES BWA
5.1 years ago by Laven9 • 0
0
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2
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3.1k
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Comment: A: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
updated 5.2 years ago by 44k • written 5.3 years ago by • 0
0
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1
reply
1.4k
views
How to skip vep-annotating step for vcf2maf
Vcf2maf
5.2 years ago by Laven9 • 0
0
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0
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3.3k
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Comment: C: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
4
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10
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3.3k
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How can I split WES FASTQ file into sub-files for each chromosome ?
WES split fastq chromosome
5.2 years ago by Laven9 • 0
0
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0
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3.3k
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Comment: A: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
0
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0
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3.3k
views
Comment: C: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
0
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1
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3.3k
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Comment: C: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
0
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0
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3.3k
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Comment: C: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
0
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1
reply
3.3k
views
Comment: C: How can I split WES FASTQ file into sub-files for each chromosome ?
5.2 years ago by Laven9 • 0
0
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0
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3.1k
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Comment: C: CNVkit output problem: Is "log2" the same as "Seg_mean"? OR how can I get "Seg_m
5.3 years ago by Laven9 • 0
0
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2
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1.7k
views
How should I input CNV files and mutation files into R to run ABSOLUTE? Respectively or integrated?
ABSOLUTE
updated 5.4 years ago by 88k • written 5.4 years ago by • 0
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