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Showing :
questions
0
votes
4
replies
930
views
Overlapping bases count in WGS
wgs
overlap
count
metrics
bases
2.5 years ago by
NB
▴ 960
12
votes
3
replies
20k
views
Calculate z-scores from GWAS summary stats
summary-stats
GWAS
z-scores
updated 22 months ago by
Ram
43k • written 9.0 years ago by
NB
▴ 960
5
votes
11
replies
2.0k
views
CNV and pseudogenes
cnv
NGS
pseudogenes
exomedepth
updated 4.0 years ago by
geocarvalho
▴ 360 • written 5.6 years ago by
NB
▴ 960
1
vote
6
replies
1.9k
views
Calculate coverage from SAM file
sam
coverage
no header
samtools
updated 4.3 years ago by
onestop_data
▴ 330 • written 4.3 years ago by
NB
▴ 960
2
votes
9
replies
3.8k
views
Convert vcf phased data to plink
vcf
plink
phased-haplotype
updated 10 months ago by
Ram
43k • written 4.9 years ago by
NB
▴ 960
5
votes
8
replies
2.7k
views
Downsample BAM for targeted NGS panels
downsample
targeted-NGS
sambamba
updated 5.0 years ago by
shrirambhosle
▴ 30 • written 5.1 years ago by
NB
▴ 960
0
votes
1
reply
3.2k
views
Plots using GWAS and eQTL datasets with locuszoom
GWAS
eQTL
locuszoom
plots
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
NB
▴ 960
0
votes
7
replies
1.9k
views
File format for HGMD pro file flat
variant-analysis
HGMD
annovar
updated 13 months ago by
Ram
43k • written 5.3 years ago by
NB
▴ 960
3
votes
3
replies
1.6k
views
Extract info on OMIM Phenotype
OMIM
database
extract
updated 5.3 years ago by
GenoMax
142k • written 5.3 years ago by
NB
▴ 960
2
votes
5
replies
3.0k
views
Difference in Haplotypecaller in GATKv4 Vs Gatk3.7
gatk
haplotypecaller
updated 5.5 years ago by
lffu_0032
▴ 90 • written 5.5 years ago by
NB
▴ 960
0
votes
4
replies
1.9k
views
Tools to detect CNV for NGS-mtDNA
mtDNA
NGS
updated 11 months ago by
Ram
43k • written 5.7 years ago by
NB
▴ 960
8
votes
7
replies
2.5k
views
Down sampling BAM files for CNV detection
dowsampling
BAM
CNV
NGS
updated 5.7 years ago by
WouterDeCoster
47k • written 5.7 years ago by
NB
▴ 960
3
votes
4
replies
2.4k
views
Identify or update refseq transcript version on snpeff
snpeff
refseq
variant-annotation
ngs
5.8 years ago by
NB
▴ 960
5
votes
15
replies
5.4k
views
Annotation with snpEFF
annotation
vcf
snpeff
extractFields
updated 5.8 years ago by
Biostar
20 • written 5.9 years ago by
NB
▴ 960
0
votes
1
reply
3.7k
views
CNV calling using ExomeDepth
CNV
ExomeDepth
reference
updated 6.0 years ago by
andrew.j.skelton73
6.6k • written 6.0 years ago by
NB
▴ 960
2
votes
4
replies
1.4k
views
mm10: Sequence length difference between interval file and reference
mm10
sequence length
ucsc
mouse
reference
updated 6.2 years ago by
Pierre Lindenbaum
161k • written 6.2 years ago by
NB
▴ 960
5
votes
9
replies
3.9k
views
VEP tools output
vep
ensembl
output
updated 6.2 years ago by
Ben_Ensembl
★ 2.4k • written 6.2 years ago by
NB
▴ 960
2
votes
3
replies
1.9k
views
Unit-testing for NGS data analysis pipeline
unit-testing
NGS
pipeline
updated 6.3 years ago by
apeltzer
▴ 150 • written 6.3 years ago by
NB
▴ 960
8
votes
9
replies
5.7k
views
Computer specs for Bioinformatics
computer specs
desktop
updated 6.4 years ago by
Devon Ryan
104k • written 6.4 years ago by
NB
▴ 960
1
vote
12
replies
2.7k
views
Detection of deletion for mitochondrial NGS analysis at position 3107
mitochondria
NGS
alignment
mtDNA
updated 6.5 years ago by
Gabriel R.
★ 2.9k • written 6.5 years ago by
NB
▴ 960
2
votes
5
replies
4.2k
views
HGVS annotation for intronic indels with annovar
annotation
indels
intronic
HGVS
6.5 years ago by
NB
▴ 960
8
votes
6
replies
2.2k
views
NGS data preprocessing from NextSeq
data preprocessing
nextSeq
updated 6.6 years ago by
Devon Ryan
104k • written 6.6 years ago by
NB
▴ 960
0
votes
0
replies
1.7k
views
How to convert Sequenom genotype data to plink
plink
sequenom
updated 10 months ago by
Ram
43k • written 8.0 years ago by
NB
▴ 960
4
votes
3
replies
2.8k
views
What is the best tool for association analysis for indels ?
indels
association-analysis
updated 11 months ago by
Ram
43k • written 8.0 years ago by
NB
▴ 960
2
votes
5
replies
11k
views
How to interpret heterozygosity rate ?
heterozygosity
plink
updated 19 months ago by
Ram
43k • written 8.8 years ago by
NB
▴ 960
0
votes
0
replies
1.7k
views
Error in Snp set analysis using MetaSKAT
MetaSKAT
R
updated 15 months ago by
Ram
43k • written 9.0 years ago by
NB
▴ 960
0
votes
1
reply
2.0k
views
Tools/Softwares to find proxies for Indels
indels
proxies
updated 2.0 years ago by
Ram
43k • written 9.3 years ago by
NB
▴ 960
2
votes
1
reply
2.1k
views
NGSrich target enrichment: software error
software error
NGSrich
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
NB
▴ 960
9
votes
5
replies
7.2k
views
Plink allele scoring output
plink
allele-scoring
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
NB
▴ 960
0
votes
0
replies
3.5k
views
conditional analysis and gene-wide analysis
conditional analysis
gene-wide analysis
interpret
updated 9.4 years ago by
Biostar
20 • written 9.5 years ago by
NB
▴ 960
5
votes
6
replies
18k
views
Pros and cons of Illumina HiSeq and Next Seq
hi-seq
illumina
next-seq
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
NB
▴ 960
2
votes
4
replies
2.3k
views
plotting pvalues from 2 data sets
pvalues
plots
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
NB
▴ 960
0
votes
4
replies
1.8k
views
follow-up on a significant variant/Gene
protein
follow-up
SNP
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
NB
▴ 960
0
votes
2
replies
3.7k
views
extract SNPs from compressed PLINK files
PLINK
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
NB
▴ 960
5
votes
5
replies
7.5k
views
Convert .Pre Files To .Ped And .Map Files For Plink
plink
updated 9.8 years ago by
dweeks.pitt
▴ 40 • written 12.0 years ago by
NB
▴ 960
5
votes
3
replies
6.3k
views
Low Coverage Depth On Exome Sequencing
exome-sequencing
coverage
updated 10.1 years ago by
Katie D'Aco
★ 1.1k • written 10.1 years ago by
NB
▴ 960
5
votes
6
replies
4.5k
views
How Can I Annotate Cnvs
cnv
updated 10.1 years ago by
Min
▴ 90 • written 11.1 years ago by
NB
▴ 960
0
votes
2
replies
2.3k
views
How Can I Overlay My Snp Variants With Various Databases
1000genomes
hapmap
dbsnp
updated 10.9 years ago by
ajc8
▴ 120 • written 11.0 years ago by
NB
▴ 960
4
votes
5
replies
1.7k
views
Why Is The Snp Info Missing From Dbsnp ?
snp
dbsnp
updated 10.9 years ago by
Jorge Amigo
14k • written 10.9 years ago by
NB
▴ 960
1
vote
5
replies
7.3k
views
How To Create Cluster Files For Plink When Performing A Stratified Analysis On Three Different Population Datasets
deleted-post
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
NB
▴ 960
3
votes
1
reply
1.8k
views
Where To Obtain The Allele Frequency Information Of The 200 Danish Exomes?
hg19
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
NB
▴ 960
13
votes
4
replies
4.0k
views
Rare Variant Snps With No Allele Frequency
updated 11.2 years ago by
Matthieu Miossec
▴ 370 • written 11.2 years ago by
NB
▴ 960
0
votes
1
reply
4.7k
views
Prediction Tools For Snps - Grantham Scores And Phylop
updated 11.5 years ago by
Ashutosh Pandey
12k • written 11.5 years ago by
NB
▴ 960
2
votes
3
replies
2.4k
views
How To Convert Ccds Ids To Swiss Prot Ids
swissprot
ccds
updated 10 months ago by
Ram
43k • written 11.5 years ago by
NB
▴ 960
9
votes
6
replies
2.2k
views
Matching The Entries And Printing Data
sequence
extraction
id
script
updated 11.6 years ago by
Andrzej Zielezinski
11k • written 11.6 years ago by
NB
▴ 960
5
votes
7
replies
10k
views
Whole Genome Analysis Pipeline (Illumina)
illumina
pipeline
updated 12.1 years ago by
reshetovdenis
• 0 • written 12.1 years ago by
NB
▴ 960
46 results • Page
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