How To Convert Ccds Ids To Swiss Prot Ids

Hello,

I have a list of over 10,000 human ccds ids, is there any way I can convert or retrieve swiss prot ids for the same ?

Thank you

swissprot ccds

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updated 3.1 years ago by Ram

• written 13.7 years ago by NB

Please search this site using the term "biomart" for the many answers to the problem of ID mapping.

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written 13.7 years ago by Neilfws

1 answer

As mentioned Biomart is a good option but there are some gotchas, The key one is many CCDS to one SwissProt because of splicing, but they will not all match (CCDS <> VARSPLIC). You could try CCDS > Ensembl gene > UniProt

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written 13.7 years ago by cdsouthan

Question states that they are human.

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written 13.7 years ago by Neilfws

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