Finalising Genome Sequence
I have two assemblies of the same genome, sequenced independently. When I align them there are over 10,000 SNPS. Is there any way I can determine what the true sequence is?
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Please elaborate on “the same genome”.
Are these 2 independent isolates from exactly the same source, or do they have even subtly different origins?
Please also add more information about the organism, data, and sequencing technology. Your question isn’t really answerable in it’s current form.