More posts like this
-
Question about `vg giraffe`
written by zhengluo 0When I use `vg giraffe` to align reads to a graph and generate a BAM file, is there a way to determine the positions aligned …
-
Are there any tools for mutational analysis of viruses?
written by joey 1Hi. I just recently sequenced a viral genome and wanted to analyze the SNPs in the sequence. Are there any free tools or software for …
-
Comparing reference genome assemblies of two plant varieties
written by Chiara 1Hi everybody, I planned to compare reference genome assemblies of two plant varieties (~1.1 Gb genome size) to identify nucleotide sequence divergence (SNPs per kb) …
-
Finding indel at end of contig with nucmer
written by kmyers2 9I have two WGS fasta files generated from PacBio sequencing of a metagnome sample: A.fasta and B.fasta. When aligned with Mauve, I can see that …
-
Align to inserted sequence
written by Sethzard 2We have some RNA from knock-in mice, there are two different sequences we're looking for. What is the best way to check for their presence? …
-
SNP count per gene, without disease mutations and observation bias
written by Suicyte 1Is there a painless way of compiling/estimating the number of SNPs per human gene, while excluding disease-associates SNPs ? Ideally, one would also compensate for …
-
Compare Fastq files
written by fowler.trentd 0I received 8 gzipped illumina sequecing files (18G each when gzipped), and was asked to report variants. The person that sequenced them said that they …
-
Annotating Sequence Data with Patient History (Known Diseases)
written by areyoujokingme 7Hello, Biostars community! I am trying to find data, data, data. Right now, I need help finding sequencing data that comes from a person who …
-
Determining the accuracy of a "merged" genome assembly
written by mmacd 2Hello all, I have merged two large (~2.6 gb) genome assemblies from the same organism into one genome assembly using the GAA tool. I am …
-
How To Convert Ccds Ids To Swiss Prot Ids
written by NB 97Hello, I have a list of over 10,000 human ccds ids, is there any way I can convert or retrieve swiss prot ids for the …
Please elaborate on “the same genome”.
Are these 2 independent isolates from exactly the same source, or do they have even subtly different origins?
Please also add more information about the organism, data, and sequencing technology. Your question isn’t really answerable in it’s current form.