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0
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366
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Merge CollectInsertSizeMetrics outputs
Picard CollectInsertSizeMetrics
19 months ago by MS ▴ 30
6
votes
4
replies
3.2k
views
CIBERSORT input file for RNA-Seq data
Cibersort RNA-Seq
updated 18 months ago by ★ 4.3k • written 2.6 years ago by ▴ 30
0
votes
0
replies
351
views
determination of miRNA FPKM value
mirdeep2 fpkm cufflinks
2.1 years ago by MS ▴ 30
1
vote
2
replies
754
views
Tumor cell percentage detection tool
cfdna Tumor maftools
updated 11 months ago by 43k • written 2.5 years ago by ▴ 30
0
votes
1
reply
825
views
How to get vafCol converting annovar outputs to maf object
inferHeterogeneity maftools annovarToMaf
updated 2.2 years ago by ▴ 120 • written 2.6 years ago by ▴ 30
0
votes
3
replies
599
views
Tutorial for ROC curve analysis using DE RNA data in R
ROC
updated 2.2 years ago by 6.2k • written 2.2 years ago by ▴ 30
0
votes
6
replies
1.6k
views
Unsupervised hierarchical clustering of DEG in Rstudio
hclust clustering Unsupervised DEGclustering
updated 2.3 years ago by ★ 16k • written 2.3 years ago by ▴ 30
2
votes
4
replies
1.6k
views
How to merge miRDeep2 counts for DeSeq2 analysis?
DEmiRNA miRDeep2 smallRNA-SEQ
2.4 years ago by MS ▴ 30
0
votes
0
replies
499
views
Immune cell heterogeneity clustering using CIBERSORT output
cell immune hierarchical cibersort clustering heterogeneity Deconvolution
2.5 years ago by MS ▴ 30
1
vote
3
replies
1.6k
views
Header error while converting sam file to bam
errorconvertsamtobam samtools bowtie samtoolsheadererror
updated 2.5 years ago by ▴ 300 • written 2.5 years ago by ▴ 30
0
votes
0
replies
739
views
Comparison of ChIPseeker and GREAT peak annotations
Peak annotation GREAT ChIPseeker
2.6 years ago by MS ▴ 30
7
votes
7
replies
3.6k
views
6 follow
How to get output of annotated genes from ChIPseeker tool
ChIPseeker peakannotation
updated 2.6 years ago by ★ 1.9k • written 3.1 years ago by ▴ 30
0
votes
0
replies
865
views
How to get vaf information column using annovartomaf
inferHeterogeneity vafCol maftools t_vaf annovartomaf
2.6 years ago by MS ▴ 30
2
votes
5
replies
1.0k
views
how to determine genes expressed in NK cells using DE RNA-Seq data
ImmGen NKcellgenes
updated 2.9 years ago by 43k • written 2.9 years ago by ▴ 30
2
votes
13
replies
2.7k
views
pearson correlation between lncRNA and mRNA
pearson correlation R cor.test
updated 2.5 years ago by 43k • written 2.9 years ago by ▴ 30
0
votes
0
replies
793
views
Best Tool for Tumor Cell Percentage Calculation (Paired NGS data)
next-gen snp SNP NGS
4.9 years ago by MS ▴ 30
0
votes
0
replies
1.5k
views
gatk AnalyzeCovariates The following object is masked from package stats
R AnalyzeCovariates stats gatk
5.3 years ago by MS ▴ 30
1
vote
5
replies
1.7k
views
defuse running error message
defuse software error
5.3 years ago by MS ▴ 30
3
votes
1
reply
7.3k
views
conda Solving environment: failed
defuse conda anaconda chimerascan
updated 5.3 years ago by 104k • written 5.3 years ago by ▴ 30
2
votes
4
replies
1.7k
views
why FastQC tool K-mer content parameter is absent?
fastqc wts k-mer afterQC fastp
5.3 years ago by MS ▴ 30
2
votes
2
replies
1.2k
views
Best tool for Chimeric Transcript Analysis?
RNA-Seq WTS Chimeric NGS fusion
updated 5.3 years ago by ★ 1.0k • written 5.3 years ago by ▴ 30
0
votes
8
replies
1.3k
views
AfterQC what is the reason killed
sequence alignment
5.4 years ago by MS ▴ 30
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