hi,
I am searching for a tool that can determine genes expressed in NK cells.
I have a gene list as a result of RNA-Seq data DE analysis and I want to determine which of these genes are expressing in NK cells.
I tried ImmGen server but it accepts max. 200 genes.
thanks
1 answer
ImmGen has a download portal with normalized and (sometimes) raw counts: http://rstats.immgen.org/DataPage/
Just download what you need, e.g. the RNA-seq datasets, and then just filter out what you need, and be it with Excel. For cutoffs please see earlier threads on what can be considered an "expressed gene", e.g. cutoff for expressed genes in DESeq2 or simply consider a gene being expressed it the raw count is > 0.
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Use tags to pick keywords, not write the entire question again.
ImmGenis a valid tag.expressedandinare not.I tried to correct it, thank you