Cell Type and Gene Specific Survival Analysis in scRNA-seq
Hi Biostars Community,
As I understand, TCGA is composed of bulk RNA-seq data from various cancer types. Is there an opportunity to perform survival analysis based on the expression of a gene that is specific to a cell type (e.g. how do cytotoxicity markers in T cells but not in NK cells affect the cancer survival)?
There are some computational methods for deconvolution of bulk RNA-seq data. However, is there a scRNA-seq related cancer cohort database?
Thank you in advance,
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