Tumor cell percentage detection tool
Hi,
I have done Gatk mutect2 pipeline and get annovar results for ffpe and cfdna samples. I want to determine tumor percentage in my data.
I used maftools inferheterogeneity function but it doesnt give tumor percentage.
I confused a bit can I use maftools results for tumor percentage estimation ör can anyone suggest a tool for this purpose?
2 answers
A few tools will do this, control-FREEC, THetA, CloneCNA, ASCAT
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