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questions
1
vote
2
replies
348
views
WGCNA, correlation with trait data from different individuals
WGCNA
12 weeks ago by
boczniak767
▴ 850
4
votes
6
replies
6.3k
views
Interpro Enrichment - Any Organism
enrichment
function
updated 10 months ago by
Ram
44k • written 12.4 years ago by
boczniak767
▴ 850
1
vote
2
replies
1.1k
views
RSAT, meme to transfac conversion problem
meme
transfac
updated 12 months ago by
hopdebee
• 0 • written 2.8 years ago by
boczniak767
▴ 850
0
votes
0
replies
517
views
Two factors plus time, LRT with DEseq2
deseq2
time-course
14 months ago by
boczniak767
▴ 850
0
votes
0
replies
560
views
retrieve all significant motifs from meme suite programs
meme
2.9 years ago by
boczniak767
▴ 850
1
vote
2
replies
1.6k
views
Extract transcript fasta using gff
fasta
gff
3.0 years ago by
boczniak767
▴ 850
0
votes
0
replies
1.0k
views
findMotifs vs findMotifsGenome, inequality of results
homer
motifs
3.0 years ago by
boczniak767
▴ 850
0
votes
0
replies
712
views
TSS file format - loadPromoters.pl in Homer
TSS
Homer
3.1 years ago by
boczniak767
▴ 850
0
votes
7
replies
1.4k
views
cDNA database based on genome resequencing
cDNA
resequencing
microarray
3.0 years ago by
boczniak767
▴ 850
1
vote
3
replies
1.1k
views
Overall mappability of genome
gem
mappability
ngs
3.1 years ago by
boczniak767
▴ 850
0
votes
1
reply
1.1k
views
bbmap, mapq and uniquelly mapped reads filtering
alignment
mapq
updated 3.1 years ago by
GenoMax
142k • written 3.1 years ago by
boczniak767
▴ 850
3
votes
17
replies
2.9k
views
FAIRE for non-standard cultivar, mapping to reference, MAPQ
sequencing
faire
mapping
3.2 years ago by
boczniak767
▴ 850
0
votes
11
replies
2.1k
views
bbmap for FAIRE-seq and other line than reference
aligner
mapping
sequencing
3.2 years ago by
boczniak767
▴ 850
0
votes
4
replies
1.5k
views
Reactome Plant to Cytoscape - possible?
cytoscape
network
updated 3.5 years ago by
Biostar
20 • written 4.8 years ago by
boczniak767
▴ 850
0
votes
2
replies
1.0k
views
Small pathways but big network files
cytoscape
network
updated 4.1 years ago by
Biostar
20 • written 5.7 years ago by
boczniak767
▴ 850
0
votes
2
replies
1.1k
views
Clustering of log-fold change with zeros
clustering
gene expression
4.3 years ago by
boczniak767
▴ 850
0
votes
0
replies
701
views
Compare MN-ase and FAIRE-seq/DNA-se results
DNA-se
FAIRE
MN-ase
4.3 years ago by
boczniak767
▴ 850
0
votes
0
replies
1.3k
views
homer IDR, pseudoreplicates error
Homer
FAIRE
IDR
4.4 years ago by
boczniak767
▴ 850
2
votes
2
replies
1.1k
views
Cytoscape, cannot delete column
cytoscape
4.6 years ago by
boczniak767
▴ 850
0
votes
1
reply
993
views
Retrieve gene from GEO/ArrayExpress datasets
databses
4.7 years ago by
boczniak767
▴ 850
0
votes
4
replies
1.5k
views
Cytoscape - disproportionately big files
cytoscape
network
5.3 years ago by
boczniak767
▴ 850
0
votes
1
reply
2.9k
views
gappedPeak format MACS2
FAIRE-seq
ChIP-Seq
BED
updated 6.3 years ago by
dfournie
• 0 • written 7.3 years ago by
boczniak767
▴ 850
0
votes
8
replies
2.6k
views
wig file from fasta
wig
fasta
3.1 years ago by
boczniak767
▴ 850
1
vote
4
replies
1.5k
views
gene - GO file, select most detailed annotation
GO
6.9 years ago by
boczniak767
▴ 850
6
votes
2
replies
2.5k
views
Grow/shrink ranges in bed file to a specified length
bed
updated 7.2 years ago by
Pierre Lindenbaum
162k • written 7.2 years ago by
boczniak767
▴ 850
0
votes
2
replies
1.4k
views
Pseudo-peaks in upstream regions
BED
sequence
7.3 years ago by
boczniak767
▴ 850
5
votes
14
replies
3.1k
views
FAIRE-seq - actively maintained peak-callers
ChIP-Seq
FAIRE-seq
peaks
updated 7.3 years ago by
EagleEye
7.5k • written 7.3 years ago by
boczniak767
▴ 850
0
votes
1
reply
2.0k
views
Cytoscape, select/filter multpile ID
cytoscape
filter
7.7 years ago by
boczniak767
▴ 850
0
votes
0
replies
1.3k
views
Annotating resequenced genome
genome
sequencing
7.8 years ago by
boczniak767
▴ 850
2
votes
1
reply
2.4k
views
FAIRE-seq optimal coverage - large genome
FAIRE-seq
coverage
updated 2.6 years ago by
Ram
44k • written 10.0 years ago by
boczniak767
▴ 850
4
votes
4
replies
9.8k
views
[Excel 2003] Heatmap, Keep Color Only
expression
updated 12.0 years ago by
Pawel Szczesny
3.2k • written 12.0 years ago by
boczniak767
▴ 850
1
vote
3
replies
3.0k
views
Interpro Parentchildtreefile -> .Obo File
annotation
ontology
updated 12.3 years ago by
Pierre Lindenbaum
162k • written 12.3 years ago by
boczniak767
▴ 850
6
votes
2
replies
5.9k
views
Creating List Of Vectors, From Txt File With Unequal Fields Per Line
r
list
read
updated 12.3 years ago by
Sean Davis
27k • written 12.3 years ago by
boczniak767
▴ 850
0
votes
0
replies
2.1k
views
Clustering Multiseries Data R
clustering
microarray
12.5 years ago by
boczniak767
▴ 850
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