Cytoscape, select/filter multpile ID
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Entering edit mode
7.6 years ago
boczniak767 ▴ 850

Maybe I'm missing something, but I cannot find a way to select multiple nodes based on IDs. I can do that using "search" option with OR operator but it requires manual adding of search terms. There is an option to "import filter" but the file (which structure can be seen when you export filter) has a complex structure

`

[ {
  "name" : "Default filter",
  "transformers" : [ {
    "id" : "org.cytoscape.CompositeFilter",
    "parameters" : {
      "type" : "ANY"
    },
    "transformers" : [ {
      "id" : "org.cytoscape.ColumnFilter",
      "parameters" : {
        "predicate" : "CONTAINS",
        "criterion" : "GRMZM6G039492",
        "caseSensitive" : false,
        "type" : "nodes",
        "columnName" : "Pathway"
      }
    }, {
      "id" : "org.cytoscape.ColumnFilter",
      "parameters" : {
        "predicate" : "CONTAINS",
        "criterion" : "GRMZM2G154182",
        "caseSensitive" : false,
        "type" : "nodes",
        "columnName" : "Pathway"
      }
    }, {
      "id" : "org.cytoscape.ColumnFilter",
      "parameters" : {
        "predicate" : "CONTAINS",
        "criterion" : "GRMZM2G062650",
        "caseSensitive" : false,
        "type" : "nodes",
        "columnName" : "Pathway"
      }
    } ]
  } ]
} ]

so code creation to edit it (include multiple interesting IDs) is not very easy.

Any hints would be appreciated.

cytoscape filter • 1.9k views
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Entering edit mode

I've found the answer here creating sub-network from a gene list in cytoscape

sorry for duplicate - bad search terms :P

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