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10
votes
2
replies
2.0k
views
Where can I download some example BAM files?
ngs bam
updated 2.2 years ago by 11k • written 2.2 years ago by ▴ 740
0
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0
replies
2.2k
views
Comment: Comment: can't run Aracne -- Java error
2.9 years ago by Federico Giorgi ▴ 740
0
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0
replies
22k
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Answer: Answer: HISAT error: Encountered internal HISAT2 exception (#1)
3.1 years ago by Federico Giorgi ▴ 740
0
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0
replies
1.3k
views
Comment: C: Metabolomics / Transcriptomics dataset?
3.6 years ago by Federico Giorgi ▴ 740
1
vote
3
replies
1.3k
views
Metabolomics / Transcriptomics dataset?
RNA-Seq metabolomics transcriptomics dataset
updated 3.6 years ago by 3.6k • written 3.6 years ago by ▴ 740
4
votes
0
replies
726
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by 43k • written 4.4 years ago by ▴ 740
5
votes
1
reply
11k
views
Answer: A: Blast Output With Species Name
updated 4.4 years ago by 43k • written 10.5 years ago by ▴ 740
0
votes
1
reply
4.6k
views
Answer: A: How Can I Run Estscan2 (Perl)
updated 4.4 years ago by 43k • written 12.6 years ago by ▴ 740
1
vote
2
replies
1.0k
views
Consensus sequence from multiple BAM files on a single position
samtools bam mpileup
updated 4.7 years ago by ★ 1.2k • written 4.7 years ago by ▴ 740
3
votes
1
reply
24k
views
Answer: A: Vertebrate Subset Nr Database? Build My Own?
updated 4.7 years ago by 43k • written 10.3 years ago by ▴ 740
0
votes
0
replies
180k
views
Comment: C: How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
updated 4.9 years ago by 43k • written 11.1 years ago by ▴ 740
1
vote
0
replies
8.2k
views
Answer: Answer: Parsing Ace File To Fasta Formated Alignement
updated 6 months ago by 43k • written 12.6 years ago by ▴ 740
0
votes
0
replies
1.8k
views
Comment: C: Show RNASeq coverage distribution over transcript length
5.9 years ago by Federico Giorgi ▴ 740
1
vote
2
replies
1.8k
views
Show RNASeq coverage distribution over transcript length
RNA-Seq BAM sequencing Transcriptomics
updated 5.9 years ago by 8.7k • written 5.9 years ago by ▴ 740
2
votes
1
reply
2.8k
views
Answer: A: question about DiffBind
5.9 years ago by Federico Giorgi ▴ 740
15
votes
3
replies
54k
views
Answer: A: How To Download All Sra Samples At Once ?
5.9 years ago by Federico Giorgi ▴ 740
1
vote
1
reply
2.5k
views
Answer: A: how to find new transcript from bam file?
6.0 years ago by Federico Giorgi ▴ 740
0
votes
1
reply
14k
views
Answer: A: download from SRA
6.0 years ago by Federico Giorgi ▴ 740
5
votes
2
replies
1.9k
views
SNP/indel annotation in Arabidopsis
arabidopsis SNP indel varscan
updated 6.1 years ago by 16k • written 6.1 years ago by ▴ 740
4
votes
5
replies
3.8k
views
Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
r rna
updated 6.3 years ago by 20 • written 12.2 years ago by ▴ 740
39
votes
17
replies
43k
views
13 follow
Extract Cds Fastas From A Gff Annotation + Reference Sequence
gff CDS
updated 15 months ago by 43k • written 12.0 years ago by ▴ 740
1
vote
0
replies
11k
views
Answer: A: Co-Expression Networks Of Rna-Seq
10.4 years ago by Federico Giorgi ▴ 740
6
votes
4
replies
11k
views
Blast Output With Species Name
blast metagenomics
10.5 years ago by Federico Giorgi ▴ 740
2
votes
1
reply
16k
views
Answer: A: Bowtie & Tophat
11.1 years ago by Federico Giorgi ▴ 740
3
votes
4
replies
2.3k
views
Running Tophat2 On Two Joined Genomes
tophat2 rnaseq bowtie bowtie2
updated 11.1 years ago by ▴ 10 • written 11.1 years ago by ▴ 740
0
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1
reply
2.3k
views
Comment: C: Running Tophat2 On Two Joined Genomes
11.1 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
8.2k
views
Comment: C: How Fundamental Is The 4 Gb Size Limit For Building Burrows-Wheeler Indices
11.1 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
12k
views
Comment: C: Hg19 Gene Annotation With Tophat/Cufflinks
11.4 years ago by Federico Giorgi ▴ 740
2
votes
0
replies
5.4k
views
Answer: A: Fold Change Detection In Affymetrix Microarray Data Without Replicates
11.7 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
2.8k
views
Comment: C: Custom Cdf Pipeline
11.8 years ago by Federico Giorgi ▴ 740
1
vote
1
reply
2.4k
views
Comment: C: Basic Question : #Reads Used By Tophat
11.8 years ago by Federico Giorgi ▴ 740
4
votes
0
replies
5.3k
views
Comment: C: How Are Transposable Elements Marked In A Genome?
11.8 years ago by Federico Giorgi ▴ 740
0
votes
2
replies
2.8k
views
Custom Cdf Pipeline
microarray annotation
updated 11.8 years ago by ▴ 670 • written 11.8 years ago by ▴ 740
6
votes
1
reply
43k
views
Answer: A: Extract Cds Fastas From A Gff Annotation + Reference Sequence
12.0 years ago by Federico Giorgi ▴ 740
0
votes
1
reply
43k
views
Comment: C: Extract Cds Fastas From A Gff Annotation + Reference Sequence
12.0 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.8k
views
Answer: A: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
12.1 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.8k
views
Comment: C: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
12.1 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.8k
views
Comment: C: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
12.2 years ago by Federico Giorgi ▴ 740
1
vote
0
replies
2.7k
views
Gene To Goslim Mapping
gene r bioconductor
12.3 years ago by Federico Giorgi ▴ 740
7
votes
7
replies
2.6k
views
Gbrowse2 Mysql Indexing
mysql
updated 12.5 years ago by ▴ 770 • written 12.5 years ago by ▴ 740
0
votes
0
replies
2.6k
views
Comment: C: Gbrowse2 Mysql Indexing
12.5 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
2.6k
views
Comment: C: Gbrowse2 Mysql Indexing
12.5 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
2.6k
views
Comment: C: Gbrowse2 Mysql Indexing
12.5 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
11k
views
Answer: A: Normalize Large Number Of Cel Files
12.6 years ago by Federico Giorgi ▴ 740
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