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questions
1
vote
1
reply
191
views
constructing pangenome through psvcp
psvcp
pangenome
1 day ago by
analyst
▴ 50
3
votes
2
replies
289
views
imputation through beagle
panel
beagle
reference
imputation
6 days ago by
analyst
▴ 50
0
votes
1
reply
202
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
updated 7 days ago by
chrchang523
10k • written 12 days ago by
analyst
▴ 50
0
votes
2
replies
236
views
java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
deducplicated
java.nio.bufferunderflowexception
haplotypecaller
bqsr
7 days ago by
analyst
▴ 50
2
votes
1
reply
159
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
12 days ago by
analyst
▴ 50
4
votes
5
replies
465
views
Figures are disappeared from html report of SnpEff
HTML
SnpEff
21 days ago by
analyst
▴ 50
6
votes
3
replies
239
views
Interpretting IGV output
IGV
updated 28 days ago by
Carlo Yague
8.7k • written 28 days ago by
analyst
▴ 50
7
votes
6
replies
612
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
28 days ago by
analyst
▴ 50
9
votes
4
replies
334
views
Ubuntu storage space is decreasing automatically
ubuntu
storage
updated 5 weeks ago by
colindaven
6.4k • written 5 weeks ago by
analyst
▴ 50
0
votes
1
reply
208
views
Constructing a pangenome
pangenome
rice
updated 6 weeks ago by
Michael
54k • written 6 weeks ago by
analyst
▴ 50
4
votes
5
replies
413
views
merging tetraploid vcf files through bcftools
vcf
bcftools
6 weeks ago by
analyst
▴ 50
11
votes
6
replies
600
views
Pangenome of plant
pangenome
plant
6 weeks ago by
analyst
▴ 50
6
votes
13
replies
742
views
Variant calling of GBS data
GBS
variants
BQSR
7 weeks ago by
analyst
▴ 50
10
votes
5
replies
594
views
Illumina NextSeq 500 Read Length
NGS
read
NextSeq
updated 3 months ago by
jv
★ 1.8k • written 3 months ago by
analyst
▴ 50
4
votes
3
replies
418
views
Differential expression analysis of lncRNA
expression
lncrna
counts
3 months ago by
analyst
▴ 50
15
votes
21
replies
1.2k
views
Expression analysis of LncRNA from RNA-seq data
expression
lncrna
3 months ago by
analyst
▴ 50
2
votes
4
replies
680
views
How to get only polymorphic genotypes from combined vcf file filtering out homozygous, heterozygous and missing genotypes
polymorphic
combinedVCF
genotypes
updated 4 months ago by
dthorbur
★ 2.0k • written 4 months ago by
analyst
▴ 50
0
votes
0
replies
250
views
phasing a vcf file for imputation through loimpute
loimpute
imputation
phasing
4 months ago by
analyst
▴ 50
4
votes
6
replies
660
views
gatk SelectVariants is giving duplicate allele error while extracting SNPs out of vcf file
SNP
variant-calling
gatk
updated 5 months ago by
Ram
43k • written 5 months ago by
analyst
▴ 50
9
votes
15
replies
1.3k
views
Construction of single sequence assembly out of contigs
Contigs
Bacteria
Genome
WGS
5 months ago by
analyst
▴ 50
0
votes
2
replies
335
views
standalone blastx of queries without NR annotations
miRNA
lncRNA
6 months ago by
analyst
▴ 50
6
votes
8
replies
1.0k
views
N50 value of bacterial assembly is not half of total assembly size
bacterial
asssembly
spades
6 months ago by
analyst
▴ 50
4
votes
2
replies
388
views
Tool for structural variation detection of plant WGS data
Plants
Structural-variation
WGS
6 months ago by
analyst
▴ 50
4
votes
5
replies
1.1k
views
Tools for reference-guided de novo assembly of bacterial genome
reference-guided
genome
assembly
spades
Bacterial
6 months ago by
analyst
▴ 50
10
votes
17
replies
1.9k
views
Building reference dbSNP file using WGS samples
NGS
WGS
Variant-calling
non-model
Bootstrapping
5 months ago by
analyst
▴ 50
1
vote
2
replies
858
views
KEGG Pathway analysis for non-model organism using goseq
non-model-organism
KEGG
DEG
7 months ago by
analyst
▴ 50
12
votes
8
replies
1.2k
views
Good alignment rate for DNA-seq data
Alignment
DNA-seq
RNA-seq
updated 7 months ago by
e.r.zakiev
▴ 210 • written 7 months ago by
analyst
▴ 50
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