Generating .bed file and .map file for polyploid vcf file through plink
Dear all,
I need bed files for admixture and map files for beagle imputation for polyploid plant. I tried through Plink but it do not support polyploid organisms. If I use --allow-extra-chr flag to run it anyway, I observed 0s in third row of output .bim and .map file.
Your help will be highly appreciated.
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chrchang523
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Bushra Bibi
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Bushra Bibi
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Why do you think ADMIXTURE supports polyploid input? (Note that this is an answer, not a comment.)
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