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2
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1
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393
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Answer: Answer: merging tetraploid vcf files through bcftools
6 weeks ago by Axzd ▴ 70
0
votes
1
reply
218
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Pileup of mapped diploid
diploid Pileup
10 weeks ago by Axzd ▴ 70
0
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0
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218
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Answer: Answer: Pileup of mapped diploid
10 weeks ago by Axzd ▴ 70
0
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1
reply
717
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
4 months ago by Axzd ▴ 70
0
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0
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717
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
4 months ago by Axzd ▴ 70
2
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5
replies
717
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Calling variants from a diploid assembly mapped on a haploid reference, tool suggestion?
SNP phased diploid
updated 4 months ago by 142k • written 4 months ago by ▴ 70
4
votes
2
replies
732
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP bbtools
updated 5 months ago by ★ 4.9k • written 5 months ago by ▴ 70
0
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0
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Axzd ▴ 70
0
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1
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1.8k
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Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Axzd ▴ 70
0
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1
reply
1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Axzd ▴ 70
0
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1
reply
1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Axzd ▴ 70
0
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1
reply
1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
5 months ago by Axzd ▴ 70
0
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1
reply
1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Axzd ▴ 70
0
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0
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1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Axzd ▴ 70
0
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1
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1.8k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
6 months ago by Axzd ▴ 70
15
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20
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1.8k
views
Bbtools callvariant multisample mode, + base recalibration
Bbtools
5 months ago by Axzd ▴ 70
0
votes
1
reply
929
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Comment: Comment: BBtools callvariants.sh
7 months ago by Axzd ▴ 70
0
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0
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929
views
Comment: Comment: BBtools callvariants.sh
7 months ago by Axzd ▴ 70
2
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4
replies
929
views
BBtools callvariants.sh
SNP bbtools alignment
updated 7 months ago by 20k • written 11 months ago by ▴ 70
0
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0
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776
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Comment: Comment: How to annotate function of genes from non-model organism
7 months ago by Axzd ▴ 70
0
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0
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608
views
Comment: Comment: Help me understand "for stripped" in bcftools isec output
7 months ago by Axzd ▴ 70
1
vote
0
replies
673
views
Answer: Answer: GWAS in python?
7 months ago by Axzd ▴ 70
1
vote
2
replies
608
views
Help me understand "for stripped" in bcftools isec output
bcftools SNP
updated 7 months ago by 142k • written 7 months ago by ▴ 70
0
votes
1
reply
776
views
Answer: Answer: How to annotate function of genes from non-model organism
7 months ago by Axzd ▴ 70
0
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0
replies
693
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Comment: Comment: Most sensible way to find private SNPs from a multisamples vcf with bcftools
7 months ago by Axzd ▴ 70
0
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0
replies
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
1
vote
3
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693
views
Most sensible way to find private SNPs from a multisamples vcf with bcftools
bcftools SNP vcf
7 months ago by Axzd ▴ 70
0
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1
reply
693
views
Answer: Answer: Most sensible way to find private SNPs from a multisamples vcf with bcftools
7 months ago by Axzd ▴ 70
20
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29
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2.5k
views
6 follow
Using bcftools to find unique alt homozygous sites
bcftools
updated 7 months ago by 161k • written 7 months ago by ▴ 70
0
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0
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38k
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Comment: Comment: Converting a VCF with SNPs and indels to BED format
7 months ago by Axzd ▴ 70
0
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0
replies
927
views
Comment: Comment: Find groups of SNP in a multi sample VCF with bcftools
7 months ago by Axzd ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
1
reply
38k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
7 months ago by Axzd ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
1
reply
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
0
replies
2.5k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
7 months ago by Axzd ▴ 70
0
votes
0
replies
528
views
Answer: Answer: Filter vcf SNPs by sample GT value
7 months ago by Axzd ▴ 70
1
vote
1
reply
919
views
Answer: Answer: Adapters finder
7 months ago by Axzd ▴ 70
0
votes
1
reply
557
views
Comment: Comment: Missing BUSCOs are actually present in the transcriptome based on BLASTx?
7 months ago by Axzd ▴ 70
0
votes
0
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562
views
Comment: Comment: HiFi read alignment with vg giraffe
7 months ago by Axzd ▴ 70
0
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0
replies
499
views
Comment: Comment: How would you define homologous windows between 2 genomes?
7 months ago by Axzd ▴ 70
2
votes
3
replies
499
views
How would you define homologous windows between 2 genomes?
genomics comparison mapping
7 months ago by Axzd ▴ 70
2
votes
1
reply
441
views
Reducing BWA mem seed length when a genome is highly heterozygous?
alignment bwa
updated 7 months ago by 20k • written 8 months ago by ▴ 70
0
votes
0
replies
315
views
Fastest way to find private SNPs for each sample
SNP
8 months ago by Axzd ▴ 70
0
votes
1
reply
374
views
Expanding gVCF box from GATK
GATK VCF gVCF
updated 9 months ago by 22k • written 9 months ago by ▴ 70
0
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1
reply
723
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
9 months ago by Axzd ▴ 70
0
votes
0
replies
723
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
9 months ago by Axzd ▴ 70
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