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Problem with Mirdeep2 and Randfold output
mirdeep2 Randfold
28 days ago by otieno43 ▴ 30
1
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0
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405
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Answer: Answer: Problem with Mirdeep2 and Randfold output
28 days ago by otieno43 ▴ 30
0
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0
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491
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Comment: Comment: UMI_extract for paired end reads of micro_RNA
9 weeks ago by otieno43 ▴ 30
1
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5
replies
491
views
UMI_extract for paired end reads of micro_RNA
UMI-tools UMI miRNA
updated 9 weeks ago by 82k • written 9 weeks ago by ▴ 30
0
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1
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491
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Comment: Comment: UMI_extract for paired end reads of micro_RNA
9 weeks ago by otieno43 ▴ 30
0
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1
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271
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 3 months ago by ★ 2.0k • written 3 months ago by ▴ 30
0
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0
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250
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Problem with mirdeep2: The mapped reference id from refdb.arf is not an id of the genome fasta file
mirdeep2
updated 4 months ago by 43k • written 4 months ago by ▴ 30
0
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3
replies
585
views
Extracting list of identical items from several excel files
from excel items Extract file
updated 5 months ago by • 0 • written 5 months ago by ▴ 30
0
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0
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267
views
How to deal with mirdeep2 output "miRBase miRNAs not detected by miRDeep2"
miRNAs miRBase
6 months ago by otieno43 ▴ 30
0
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0
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607
views
Comment: Comment: How to use awk and grep -v option to exclude several patterns from several lines
6 months ago by otieno43 ▴ 30
2
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2
replies
607
views
How to use awk and grep -v option to exclude several patterns from several lines
AWK GREP
updated 6 months ago by 11k • written 6 months ago by ▴ 30
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1
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1.1k
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Comment: Comment: Alignment of mirna on specific organism data from mirbase
7 months ago by otieno43 ▴ 30
0
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9
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1.1k
views
Alignment of mirna on specific organism data from mirbase
mirbase miRNA
updated 7 months ago by 161k • written 7 months ago by ▴ 30
0
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1
reply
495
views
How to obtain unmapped reads from the paired end samples using hisat2
fastq hisat2
updated 14 months ago by 43k • written 15 months ago by ▴ 30
0
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1
reply
708
views
Minimum number of UMI counts/cell
scRNAseq
updated 16 months ago by 82k • written 16 months ago by ▴ 30
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0
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1.6k
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Comment: Comment: How to obtain a data frame from "SeuratObject".
16 months ago by otieno43 ▴ 30
0
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2
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1.6k
views
How to obtain a data frame from "SeuratObject".
Count matrix
16 months ago by otieno43 ▴ 30
0
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0
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1.1k
views
Comment: Comment: STAR alignment and HTseq-count
16 months ago by otieno43 ▴ 30
0
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2
replies
1.1k
views
STAR alignment and HTseq-count
and alignment HTseq-count STAR
16 months ago by otieno43 ▴ 30
0
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1
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1.9k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
21 months ago by otieno43 ▴ 30
0
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1
reply
1.9k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
updated 21 months ago by 43k • written 21 months ago by ▴ 30
1
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4
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1.9k
views
How to use RSEM to quantify genes and transcript expression from STAR outpute file (Aligned.toTranscriptome.out.bam)
RSEM STAR
updated 21 months ago by 43k • written 21 months ago by ▴ 30
1
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3
replies
896
views
How to improve alignment of scRNA-seq data in using CellRanger
scRNAseq
updated 22 months ago by ★ 6.0k • written 22 months ago by ▴ 30
0
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0
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896
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Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
22 months ago by otieno43 ▴ 30
0
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0
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586
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Comment: Comment: How solve solve error associated with cell clustering: quickCluster
22 months ago by otieno43 ▴ 30
0
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2
replies
586
views
How solve solve error associated with cell clustering: quickCluster
scRNAseq
22 months ago by otieno43 ▴ 30
0
votes
1
reply
972
views
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
scRNAseq
updated 22 months ago by ★ 1.6k • written 22 months ago by ▴ 30
0
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0
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867
views
Comment: Comment: Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than c
22 months ago by otieno43 ▴ 30
2
votes
2
replies
867
views
Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
22 months ago by otieno43 ▴ 30
0
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0
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2.4k
views
Comment: Comment: Extract transcript fasta sequences using gtf
2.0 years ago by otieno43 ▴ 30
0
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1
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2.4k
views
Comment: Comment: Extract transcript fasta sequences using gtf
2.0 years ago by otieno43 ▴ 30
2
votes
5
replies
2.4k
views
Extract transcript fasta sequences using gtf
transcript using fasta gtf sequences
updated 2.0 years ago by 13k • written 2.0 years ago by ▴ 30
3
votes
2
replies
2.9k
views
Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
Trimmomatic adapters Trimming using
2.2 years ago by otieno43 ▴ 30
0
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0
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2.9k
views
Comment: Comment: Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
2.2 years ago by otieno43 ▴ 30
0
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1
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1.5k
views
Comment: Comment: Error in executing STAR Aligner
2.3 years ago by otieno43 ▴ 30
0
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1
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1.5k
views
Comment: Comment: Error in executing STAR Aligner
2.3 years ago by otieno43 ▴ 30
0
votes
5
replies
1.5k
views
Error in executing STAR Aligner
Exit code 102
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 30
37 results • Page 1 of 1
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