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updated 17 days ago by
Mbofire
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written 25 days ago by
Ming Tommy Tang
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Comment: Error in using BioSampleParser tool: subscript out of bounds
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marco.barr
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Hi Mohamed,
I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
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Please do a few simple Google searches before asking others for help.
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This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Ram
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Hi,
Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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GenoMax
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Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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GenoMax
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For those samples it appears that raw data was not submitted. Just an assembly.
$ esearch -db biosample -query SAMN08009548 | elink -…
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Pedro
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**I have already tried this code.
listSamples with HNSC cancer and smokers.
I need at least one supporting material to find out the survi…
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Anita
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This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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Harshita
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It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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Harshita
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Thank you so much for helping me out in this!
I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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GenoMax
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Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa
This table has the SR…
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> My sites are in an Excel file right now
![enter image description here][1]
<!-- was an American educator and academic administrator…
Answer: Filter Genome for Specific Sites
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> I have a list of ~1,300 single bp sites
Convert your file to plain text [**BED format**][1] (three fields required).
Use `bedtools slo…
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sainavyav22
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It worked, Thank you very much!
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