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21 results • Page
1 of 1
Sort: replies
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Replies
2
votes
10
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
updated 19 hours ago by
Ram
43k • written 5 months ago by
LauferVA
4.2k
1
vote
8
replies
422
views
Add stats to the plot
R
updated 3 hours ago by
marco.barr
▴ 130 • written 2 days ago by
Ghada
• 0
0
votes
5
replies
211
views
Why most genes have high padj values
RNA-seq
DEG
updated 17 hours ago by
Ram
43k • written 1 day ago by
mnx0723
• 0
0
votes
5
replies
339
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
12 hours ago by
mavy
▴ 10
0
votes
4
replies
302
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
updated 17 hours ago by
dthorbur
★ 2.0k • written 4 days ago by
Umer
▴ 50
0
votes
3
replies
204
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 13 hours ago by
marco.barr
▴ 130 • written 1 day ago by
Mohamed Samir
▴ 20
0
votes
2
replies
265
views
How can I calculate the OS of each patient?
overall-survival
15 hours ago by
Pedro
• 0
0
votes
1
reply
109
views
Kraken2 Custom Database non-deterministic results
Metagenomics
kraken2
updated 14 hours ago by
GenoMax
142k • written 15 hours ago by
Bjorn
• 0
0
votes
1
reply
88
views
How to hide label in layout file of MCscan (python version)
MCscan
updated 21 hours ago by
GenoMax
142k • written 1 day ago by
jinyi
• 0
0
votes
1
reply
116
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 21 hours ago by
marco.barr
▴ 130 • written 1 day ago by
sooni
▴ 20
0
votes
1
reply
57
views
Nextflow docker: Error response from daemon
sarek
gatk4
docker
nextflow
updated 3 hours ago by
Pierre Lindenbaum
161k • written 3 hours ago by
Peter Chung
▴ 200
0
votes
1
reply
54
views
Where to find old version of GATK best practice
gatk
updated 3 hours ago by
Pierre Lindenbaum
161k • written 3 hours ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
14
views
Calculated LAI is too large
annotation
LAI
assembly
TE
genome
53 minutes ago by
Yao
▴ 30
0
votes
0
replies
72
views
vcf phasing
beagle
WhatsHap
phasing
20 hours ago by
safeassli
▴ 10
0
votes
0
replies
84
views
transcriptome annotation
annotation
trinity
transcriptome
updated 19 hours ago by
Ram
43k • written 1 day ago by
Asim Bin Arshad
• 0
0
votes
0
replies
72
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
single-cell
scRNA-seq
updated 17 hours ago by
Ram
43k • written 23 hours ago by
ev97
▴ 20
0
votes
0
replies
120
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated 14 hours ago by
Ram
43k • written 1 day ago by
JorgeVallejo
▴ 20
0
votes
0
replies
115
views
problems in installing rDock
rDock
updated 14 hours ago by
Ram
43k • written 2 days ago by
Rodolfo Adrián
• 0
0
votes
0
replies
50
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
8 hours ago by
Christopher
• 0
0
votes
0
replies
45
views
CreateSeuratObject taking very long
seurat
7 hours ago by
eae6d2e7
• 0
0
votes
0
replies
28
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
2 hours ago by
dawnyipingzou
• 0
21 results • Page
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Recent Votes
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Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
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A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
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Popular Question
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Gabriel R.
★ 2.9k
Scholar
to
diqixiaoyaoer
▴ 20
Centurion
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marco.barr
▴ 130
Popular Question
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Peter Chung
▴ 200
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Yao
▴ 30
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DareDevil
★ 4.3k
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Shicheng Guo
★ 9.4k
Recent Replies
Comment: What is the amount of sequencing data produced annually?
by
Mohamed
• 0
Here's a more neat version of the plot generated while writing my dissertation: ![enter image description here][1] [1]: https://raw.gi…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴ 130
what a pity...
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
▴ 20
Yes, I can. But there are only two factors that affect my data PCA distribution: groups and donor. And the rest is regarded as residual. …
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
colindaven
6.4k
Please delete this as it has nothing to do with the topic of this forum, bioinformatics. Thanks
Comment: Add stats to the plot
by
marco.barr
▴ 130
if don't work try binding the stats without group. stat_data4 <- data4.ts %>% ungroup() %>% t.test(data = ., value ~ Cond…
Comment: Nextflow docker: Error response from daemon
by
Pierre Lindenbaum
161k
you should ask : https://github.com/nf-core/sarek/issues/
Comment: Where to find old version of GATK best practice
by
Pierre Lindenbaum
161k
https://github.com/gatk-workflows ?
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
Hi, if you can please post a separate question with inputs and expected output, reply here with a link to it, and I'll take a look.
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi again Alex, sorry to ask another question about this, but how can I tweak this code to keep **all** of the SNPs that pass the threshold …
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
Comment: Trimming tool
by
Ram
43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
This post does not fit the theme of this forum.
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