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News: Bioinformatics PhD Programs in the US
education PhD
updated 12 months ago by 43k • written 6.5 years ago by ▴ 70
8
votes
0
replies
1.9k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.4k
8
votes
0
replies
1.8k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 13 months ago by 43k • written 7.2 years ago by 11k
8
votes
1
reply
2.7k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 15 months ago by 43k • written 10.8 years ago by 11k
8
votes
4
replies
2.0k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
8
votes
2
replies
845
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
6 weeks ago by David Langenberger 11k
8
votes
0
replies
2.0k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 19 months ago by 43k • written 8.8 years ago by ▴ 80
8
votes
1
reply
1.8k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 2.2 years ago by ★ 27k • written 2.3 years ago by 142k
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 11 months ago by 43k • written 4.2 years ago by 100k
8
votes
0
replies
2.5k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 20 months ago by 43k • written 8.6 years ago by 11k
8
votes
0
replies
2.2k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 15 months ago by 43k • written 11.7 years ago by 100k
8
votes
2
replies
2.4k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ▴ 120
8
votes
10
replies
4.1k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 1.5k
8
votes
2
replies
910
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 14 months ago by 43k • written 4.3 years ago by 11k
8
votes
1
reply
3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 14 months ago by 43k • written 9.6 years ago by 11k
8
votes
3
replies
1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 13 months ago by 43k • written 7.6 years ago by 5.1k
8
votes
0
replies
2.8k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 14 months ago by 43k • written 11.2 years ago by 9.7k
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 21 months ago by 43k • written 8.4 years ago by ★ 2.4k
7
votes
0
replies
1.5k
views
News: First PacBio Sequel data available
pacbio sequel
updated 13 months ago by 43k • written 7.6 years ago by 142k
7
votes
0
replies
1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 11 months ago by 43k • written 4.3 years ago by 142k
7
votes
3
replies
4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 14 months ago by 43k • written 10.5 years ago by ★ 1.2k
7
votes
8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 12 months ago by 43k • written 6.5 years ago by ▴ 690
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 14 months ago by 43k • written 11.1 years ago by 11k
7
votes
1
reply
3.1k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 14 months ago by 43k • written 10.3 years ago by 11k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
7
votes
3
replies
1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.1 years ago by 100k • written 3.1 years ago by ▴ 50
7
votes
8
replies
4.2k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 19 months ago by 43k • written 10.7 years ago by ▴ 610
7
votes
0
replies
2.0k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 13 months ago by 43k • written 7.7 years ago by ▴ 290
7
votes
11
replies
2.0k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 12 months ago by 43k • written 6.8 years ago by ▴ 100
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 12 months ago by 43k • written 6.9 years ago by ★ 2.5k
7
votes
0
replies
1.8k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 15 months ago by 43k • written 11.6 years ago by 11k
7
votes
2
replies
2.3k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 13 months ago by 43k • written 7.9 years ago by 11k
7
votes
0
replies
2.9k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 13 months ago by 43k • written 7.9 years ago by ▴ 70
7
votes
1
reply
689
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
24 months ago by kzkedzierska ▴ 290
7
votes
2
replies
1.2k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
4 months ago by David Langenberger 11k
7
votes
1
reply
2.8k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.4k
7
votes
0
replies
3.2k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 21 months ago by 43k • written 10.2 years ago by 161k
6
votes
2
replies
2.5k
views
News: Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment RNA-Seq
updated 13 months ago by 43k • written 7.2 years ago by ★ 2.5k
6
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 12 months ago by 43k • written 6.9 years ago by 11k
6
votes
1
reply
3.0k
views
News: The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.7 years ago by ▴ 10 • written 4.5 years ago by 100k
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 13 months ago by 43k • written 8.2 years ago by 23k
6
votes
1
reply
1.9k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 14 months ago by 43k • written 9.0 years ago by ★ 4.2k
6
votes
4
replies
1.2k
views
News: Upcoming online training courses
Python R
2.8 years ago by carlopecoraro2 ★ 2.5k
6
votes
0
replies
2.8k
views
News: Broad Releases Fastg Multiple Seq Assembly Format
FASTG reference-format
updated 14 months ago by 43k • written 11.4 years ago by ★ 5.3k
6
votes
1
reply
2.0k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 14 months ago by 43k • written 9.4 years ago by 161k
6
votes
7
replies
5.4k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 14 months ago by 43k • written 10.3 years ago by ▴ 650
6
votes
1
reply
1.0k
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.4k
6
votes
0
replies
1.9k
views
News: Bioinformatics Contest 2017
contest
updated 13 months ago by 43k • written 7.3 years ago by ▴ 70
1,000 results • Page 3 of 20
Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Popular Question to syedahamdani94 • 0
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Recent Replies
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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