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News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by 11k
1
vote
2
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1.7k
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News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.1 years ago by ▴ 580
1
vote
1
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1.7k
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News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by 11k
2
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0
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1.7k
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News: Call for Abstracts: BOSC 2019: Bioinformatics Open Source Conference
BOSC Conference Open-Source
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.2k
1
vote
2
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1.7k
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News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
2
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0
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1.7k
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News: Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01) - last few places
RNA-Seq next-gen workshop
updated 11 months ago by 43k • written 5.8 years ago by ▴ 60
0
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0
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1.7k
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News: Integrative Genomic Viewer (IGV) works with Amazon S3
amazon igv
updated 11 months ago by 43k • written 5.3 years ago by ▴ 620
2
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3
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1.7k
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News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.2k
2
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0
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1.7k
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News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
0
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0
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1.7k
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News: Webinar: ChIP-Seq / ATAC-Seq Analysis and Integration with Gene Expression Data
webinar RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 30
5
votes
2
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1.7k
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News: #scRNABIO & organoids meeting
single-cell-sequencing microfluidics organoids
updated 11 months ago by 43k • written 5.8 years ago by ▴ 320
38
votes
8
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1.7k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 11 months ago by 35k • written 11 months ago by 11k
0
votes
0
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1.7k
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News: Course: eDNA Metabarcoding in Canada
next-gen-sequencing R
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
0
votes
0
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1.6k
views
News: Bias, robustness and scalability in single-cell differential expression analysis
RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.1k
2
votes
2
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1.6k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
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0
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1.6k
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News: Course. Analysis of single cell RNA-seq data.25 February-1 March 2019 in Berlin (Germany)
scRNAseq RNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
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5
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1.6k
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News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by 11k
1
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0
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1.6k
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News: Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing gene
updated 12 months ago by 43k • written 6.0 years ago by ▴ 10
0
votes
0
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1.6k
views
News: Analysis of single cell RNA-seq data Workshop
R RNA-Seq next-gen
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
0
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1
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1.6k
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News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 11 months ago by 43k • written 4.5 years ago by 11k
0
votes
0
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1.6k
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News: 16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
5
votes
1
reply
1.6k
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News: 2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
9
votes
4
replies
1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by ★ 1.8k
0
votes
0
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1.6k
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News: Genome Assembly and Annotation Workshop
annotation assembly genome
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.5k
0
votes
0
replies
1.6k
views
News: Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)
R next-gen RNA-Seq genome
updated 12 months ago by 43k • written 6.0 years ago by ▴ 60
13
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2
replies
1.5k
views
News: Thank you Biostars!
meta
updated 11 months ago by 43k • written 5.0 years ago by ▴ 140
5
votes
2
replies
1.5k
views
News: Google Dataset Search
google
updated 11 months ago by 43k • written 5.7 years ago by 161k
2
votes
0
replies
1.5k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 11 months ago by 43k • written 4.9 years ago by 161k
0
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0
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1.5k
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News: BioVM 18.04 - call for testing and feedback
ubuntu virtual-machine linux biovm
updated 12 months ago by 43k • written 6.1 years ago by ▴ 320
4
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0
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1.5k
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News: All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 12 months ago by 43k • written 6.0 years ago by 142k
0
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1
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1.5k
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News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 12 months ago by 43k • written 6.3 years ago by ▴ 70
0
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0
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1.5k
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News: Introduction to Python for biologists
Programming next-gen
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.5k
8
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6
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1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
5
votes
0
replies
1.5k
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News: Bioinformatics in Google Summer of Code 2018
Ensembl GSOC
updated 12 months ago by 43k • written 6.3 years ago by 23k
0
votes
0
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1.5k
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News: Eukaryotic metabarcoding (EUKB01)
Metabarcoding
updated 12 months ago by 43k • written 6.0 years ago by ▴ 60
0
votes
0
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1.5k
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News: Microbiome Data Analysis Using QIIME2 (MBQM01)
RNA-Seq next-gen
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
5
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3
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1.5k
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News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.4 years ago by ▴ 50
0
votes
0
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1.5k
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News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (23 - 26 October 2018)
hands-on RNA-Seq workshop
updated 12 months ago by 43k • written 6.0 years ago by 11k
0
votes
0
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1.4k
views
News: Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)
R
updated 12 months ago by 43k • written 6.1 years ago by ▴ 60
0
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3
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1.4k
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
6 months ago by David Langenberger 11k
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 12 months ago by 43k • written 6.2 years ago by 142k
0
votes
0
replies
1.4k
views
News: 16S Microbial Metabarcoding
R Metabarcoding
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.5k
0
votes
0
replies
1.4k
views
News: Speciation Genomics Workshop
genome snp speciation next-gen
updated 12 months ago by 43k • written 6.0 years ago by ★ 2.5k
1
vote
0
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1.4k
views
News: Free e-learning from EMBL-EBI
free-courses EMBL EBI e-learning
updated 11 months ago by 43k • written 5.9 years ago by ★ 4.0k
2
votes
3
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1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
0
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0
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1.4k
views
News: Hackathon on how to use biodata to improve health outcomes
disease drugs genomics open-targets
updated 12 months ago by 43k • written 6.0 years ago by ★ 5.2k
2
votes
2
replies
1.4k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
1
vote
0
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1.4k
views
News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 12 months ago by 43k • written 6.3 years ago by ★ 2.5k
3
votes
0
replies
1.4k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
4
votes
0
replies
1.4k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
731 results • Page 2 of 15
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Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
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Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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