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News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
6 months ago by Lars ★ 1.0k
0
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0
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333
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News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
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3
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1.4k
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
6 months ago by David Langenberger 11k
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370
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News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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328
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News: Genemod - Lab Management Software
lab-management-software research
updated 6 months ago by 43k • written 6 months ago by • 0
1
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0
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327
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News: course - Advanced Python Programming
Python-Programming
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
4
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2
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3.0k
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News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
0
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418
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News: GWAS course
R GWAS
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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349
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News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
3
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0
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582
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News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
0
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345
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News: Course - Introduction to Machine Learning in R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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427
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News: Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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364
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News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 6 months ago by 43k • written 6 months ago by ▴ 10
1
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404
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News: course - Comparative Genomics
Comparative-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
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419
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News: Online course Python Machine Learning in Biology, November 16, 2023
machine-learning python course
updated 6 months ago by 43k • written 6 months ago by • 0
122
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44
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11k
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24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 months ago by 43k • written 11.5 years ago by 100k
0
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0
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390
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News: Bioinformatics Phoenix
web-server
updated 6 months ago by 43k • written 7 months ago by • 0
1
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0
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332
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News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
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0
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347
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News: Course -Metabarcoding in Microbial Ecology
R Qiime2 Microbial-Ecology Metabarcoding
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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373
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News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 7 months ago by 43k • written 7 months ago by • 0
0
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392
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News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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1
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1.2k
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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
7 months ago by David Langenberger 11k
0
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1
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860
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
7 months ago by David Langenberger 11k
0
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426
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News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
13
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9
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2.7k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
7 months ago by GenoMax 142k
0
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0
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384
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News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 7 months ago by 43k • written 7 months ago by ▴ 120
0
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0
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345
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News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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359
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News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
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0
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488
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News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
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0
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371
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News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 months ago by PeterC_NCBI ▴ 410
0
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0
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415
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News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
7 months ago by carlopecoraro2 ★ 2.5k
0
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1
reply
635
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News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
1
vote
0
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420
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News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
480
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News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 7 months ago by ▴ 410
0
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0
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372
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News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 8 months ago by • 0
0
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0
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361
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News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
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2
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941
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News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 8 months ago by ★ 1.7k • written 8 months ago by ▴ 110
0
votes
0
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353
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News: Course - GLMMs in R
GLMM Mixed-Models
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
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0
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367
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News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
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426
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News: Genomic Prediction course
Genomic-Prediction GWAS
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
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466
views
News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
3
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5
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1.3k
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News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
0
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400
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
0
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0
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312
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 7 months ago by 43k • written 8 months ago by • 0
0
votes
0
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344
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
357
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
2
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612
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
0
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0
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363
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News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
8 months ago by mia.nahom ▴ 10
0
votes
0
replies
327
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
364
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
731 results • Page 3 of 15
Recent Votes
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
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Recent Awards • All
Popular Question to mohammadhassanj ▴ 260
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Recent Replies
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
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