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708 results • Page 2 of 15
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News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 12 months ago by 43k • written 6.1 years ago by ▴ 20
4
votes
0
replies
727
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by 43k • written 4.4 years ago by ▴ 740
4
votes
0
replies
1.0k
views
News: SIG Workshop to discuss developments in computational pathology and its interfacing opportunities with bioinformatics during ECCB 2018
microscopy wsi digital-pathology
updated 12 months ago by 43k • written 5.8 years ago by ▴ 40
4
votes
0
replies
1.4k
views
News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
3
votes
2
replies
1.2k
views
News: Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS next-generation-sequencing
updated 12 months ago by 43k • written 6.0 years ago by ★ 3.0k
3
votes
0
replies
713
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 11 months ago by 43k • written 4.7 years ago by 6.6k
3
votes
0
replies
1.3k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.2k
3
votes
0
replies
1.1k
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 12 months ago by 43k • written 6.1 years ago by 26k
3
votes
2
replies
769
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
7 weeks ago by Johannes W. Dietrich • 0
3
votes
1
reply
845
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
3
votes
0
replies
1.1k
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 12 months ago by 43k • written 5.8 years ago by 23k
3
votes
2
replies
1.0k
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 11 months ago by 43k • written 5.4 years ago by • 0
3
votes
0
replies
815
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
votes
1
reply
956
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
3
votes
0
replies
583
views
News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
3
votes
0
replies
1.4k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
3
votes
1
reply
1.2k
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 11 months ago by 43k • written 5.3 years ago by ▴ 60
3
votes
0
replies
1.4k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 12 months ago by 43k • written 6.2 years ago by 142k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
3
votes
1
reply
1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
3
votes
2
replies
698
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
12 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
1.9k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 11 months ago by 43k • written 3.9 years ago by 142k
3
votes
1
reply
972
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
3
votes
0
replies
1.3k
views
News: Nextflow Training Course
Pipeline Workflow NEXTFLOW
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
3
votes
0
replies
158
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
3
votes
0
replies
798
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 43k • written 4.5 years ago by 11k
3
votes
0
replies
312
views
News: NCBI BLAST+ 2.2.15 now available for download
NCBI Taxonomy BLAST
5 months ago by PeterC_NCBI ▴ 410
3
votes
0
replies
243
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 22 days ago by 43k • written 23 days ago by ▴ 60
3
votes
2
replies
772
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
3
votes
1
reply
962
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 11 months ago by 43k • written 5.3 years ago by ▴ 60
2
votes
1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 12 months ago by 43k • written 5.7 years ago by ▴ 150
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
825
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
votes
0
replies
803
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
2
votes
0
replies
1.1k
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 11 months ago by 43k • written 4.8 years ago by ▴ 40
2
votes
0
replies
526
views
News: ONLINE COURSE-Advanced programming in R
R
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
votes
0
replies
1.3k
views
News: April Galaxy News: UseGalaxy.org gets siblings; GCC Deadlines; GCCBOSC Childcare...
bosc galaxy events
updated 12 months ago by 43k • written 6.1 years ago by ▴ 610
2
votes
3
replies
1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 12 months ago by 43k • written 5.7 years ago by ▴ 20
2
votes
0
replies
158
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
10 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
152
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
0
replies
668
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
0
replies
1.1k
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 12 months ago by 43k • written 5.8 years ago by ▴ 330
2
votes
0
replies
1.0k
views
News: precisionFDA and Georgetown-ICBI are launching the Brain Cancer Predictive Modeling and Biomarker Discovery Challenge!
brain-tumor artificial-intelligence biomarkers
updated 11 months ago by 43k • written 4.6 years ago by ▴ 150
2
votes
0
replies
1.3k
views
News: BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 12 months ago by 43k • written 5.6 years ago by ▴ 20
2
votes
0
replies
153
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
2
votes
1
reply
483
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 8 months ago by ▴ 410
2
votes
1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by 11k
2
votes
2
replies
953
views
News: Interested in Machine Learning?
deep-learning machine-learning
updated 11 months ago by 43k • written 5.1 years ago by ★ 2.5k
2
votes
0
replies
575
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
708 results • Page 2 of 15
Recent Votes
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: How to add Ensembl id to cluster.markers in Seurat
How to add Ensembl id to cluster.markers in Seurat
Comment: Duplicated sequence samtools
Answer: Duplicated sequence samtools
Answer: Duplicated sequence samtools
Recent Locations • All
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Recent Awards • All
Scholar to Pierre Lindenbaum 161k
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Popular Question to carlopecoraro2 ★ 2.5k
Popular Question to scideas ▴ 30
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Recent Replies
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
Comment: HGVS Nomenclature of Multiple Indels found in Cis by LauferVA 4.2k
how has this code progressed? is it publically available? would you want to work together?
Comment: Design for complex RNA-Seq experiment using Deseq2 by Ezequiel • 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot by marco.barr ▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by ATpoint 82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why? by scideas ▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data by Muhammad • 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors) by nguyenn6 • 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed by anton.i.petrov • 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
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