12 days ago by
Zhenyu Zhang
★
1.2k
1
vote
2
replies
1.2k
views
0
votes
2
replies
428
views
1
vote
2
replies
278
views
3
votes
0
replies
241
views
updated 20 days ago by
Ram
43k
•
written 21 days ago by
Claire Watson
▴
60
0
votes
0
replies
222
views
updated 29 days ago by
Ram
43k
•
written 29 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
204
views
updated 29 days ago by
Ram
43k
•
written 29 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
200
views
15 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
187
views
updated 21 days ago by
Ram
43k
•
written 22 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
183
views
0
votes
0
replies
164
views
updated 26 days ago by
Ram
43k
•
written 26 days ago by
carlopecoraro2
★
2.5k
2
votes
0
replies
155
views
7 days ago by
carlopecoraro2
★
2.5k
3
votes
0
replies
154
views
updated 24 days ago by
Ram
43k
•
written 24 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
147
views
updated 22 days ago by
Ram
43k
•
written 23 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
146
views
14 days ago by
Amos Bairoch
▴
120
0
votes
0
replies
146
views
updated 17 days ago by
Ram
43k
•
written 17 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
136
views
18 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
128
views
5 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
126
views
updated 8 days ago by
Ram
43k
•
written 9 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
125
views
25 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
122
views
updated 15 days ago by
Ram
43k
•
written 15 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
120
views
0
votes
0
replies
119
views
10 days ago by
carlopecoraro2
★
2.5k
1
vote
0
replies
92
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
86
views
Recent Votes
Recent Locations •
All
United States, just now
United States, 1 minute ago
United States, 2 minutes ago
United States, 3 minutes ago
United States, 3 minutes ago
United States, 4 minutes ago
California, USA, 4 minutes ago
Recent Awards •
All
Recent Replies
Comment: Reconstruction of locus, order contigs
by
dthorbur
★
2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ashkan
▴
160
@atpoint I checked all transcripts of GAPDH. they all have 0 TPM.
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as
> some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated
by
alanh
▴
170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line.
$ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data?
by
Zhenyu Zhang
★
1.2k
Second what is said above, ensembl_id is the unique identifier.
As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs
by
BATMAN
•
0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
Thank you. What exactly do you mean? Changing `ha = rowAnnotation(text = anno_mark(at = mark_at, labels = gene_names_interesting_in_cluster…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
43k
Try tweaking the `gp` of the rowAnnotation instead of tweaking the `annotation_name_gp` - that might do the trick.
Comment: Help! Reconstruction of locus, order contigs
by
dthorbur
★
2.0k
I don't understand your comment. What do you mean?
> my idea is not to have to write it down
If you have an alignment already, why can't…
Comment: Details on salmon index
by
Rob
6.6k
Hi Lorenzo,
That is correct. The initial version of salmon used the RapMap index explained above. When we published the selective align…
Comment: Help! Reconstruction of locus, order contigs
by
BATMAN
•
0
Thanks for your reply, my idea is not to have to write it down. What I have is an alignment of the .gbk from the progressiveMauve. It would…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★
2.9k
I did some digging aroumd, no static binary. Plus it seems you need to roll your own program.
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★
2.9k
We tested it, however, it does not seem to produce a fast a file of the results or anything that we can easily parse. It produces a CIGAR a…
Traffic: 2380 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6