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Recent Replies
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
mikemakaveli1
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0
![enter image description here][1]
[1]: /media/images/3f50fe15-72e4-4f59-b301-eea63f95
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
mikemakaveli1
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0
This is what I found, sorry for the previous image ![enter image description here][1]
[1]: /media/images/0f9b75f9-bd7a-4b5b-a6d5-d79…
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
mikemakaveli1
•
0
![enter image description here][1]
[1]: /media/images/1e0cd4e3-b35b-407c-b41d-08a0f746
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
mikemakaveli1
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no, i have uploaded the file and selected the file, not sure of the blank space
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
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Vijith
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Hi dthorbur, thanks for the response. I have run Augustus using Arabidopsis as a species. I would like to know about the suitability of usi…
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
ATpoint
82k
It's an empty screenshot in terms of nothing loaded into IGV, you realize that?
Comment: IGV interpretation for ATM gene for chromosome 11 for a deceased partient
by
mikemakaveli1
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how can I interpret the mutation for the gene of ATM
Comment: How does gene length effect the number of reads mapped
by
dsull
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5.9k
Alicia Oshlack has done some cool work on this but even the plots in her papers show that TPMs sometimes overcorrect and the relationship i…
Comment: Raw counts using stringtie
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ahmad.sajad4541
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![stringtie error][1]
[1]: /media/images/6475a009-e1a6-412b-8515-a8aec173
Answer: Differential Expression Analysis using DESeq2 in R
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Erina
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![The below image contains the code and result also.][1]
[1]: /media/images/96562b96-d508-4f67-96d1-7c71aa17
Comment: High Malat-1 expression in single cell data
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dsull
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My response above was actually partly inspired off of a reading of your paper :)
Comment: Differential Expression Analysis using DESeq2 in R
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ATpoint
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> everything is showing equal in environment section. But when I am checking for equalities, it’s showing False
No idea what this means. P…
Answer: Analysis of intronic reads included scRNA-seq data
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t.montserrat.ayuso
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You can calculate the percentage of intronic reads for each cell using the [DropletQC][1] package for R.
In this preprint we discuss th…
Comment: How does gene length effect the number of reads mapped
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i.sudbery
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I did say almost - obviously things are going to get tricky at gene ends - this is why we have the concept of effective length. Its interst…
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t.montserrat.ayuso
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Malat1 correlates with the intronic content and can be used as a nuclear indicator. In this preprint we discuss about this artifact and the…
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