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Comment: UMI-Tools knee-method has great influence on the results of white list
A: Fix SAM flags on quality filtered paired-end BAM file
C: Fix SAM flags on quality filtered paired-end BAM file
C: Genes inhibiting each other's expression
C: Genes inhibiting each other's expression
A: Genes inhibiting each other's expression
Answer: PacBio Raw Data File Formats
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Recent Replies
Comment: Best practices in Fungal Genome Assembly
by
samuel.a.odonnell
▴ 520
For the short-read strains: <br/> I would recommend just using SPADES For the strains with long-reads: <br/> I think spades and masurca as…
Comment: txt file to bigwig
by
GenoMax
142k
Click on `edit`. That should open the edit window which will have a `Delete` button at bottom right to delete the comment/reply.
Comment: UMI-Tools knee-method has great influence on the results of white list
by
Assa Yeroslaviz
★ 1.9k
Can you pls make it an answer so that I can accept it? thx
Comment: Best practices in Fungal Genome Assembly
by
samuel.a.odonnell
▴ 520
I think tools like quickmerge (or Ragtag's patch command) can help for long-read assemblies, but I would definitely avoid using them with s…
Comment: txt file to bigwig
by
sogand
• 0
Hi, I tried to delete my comment but can't see any delete/remove option here! Thanks
Comment: Error with pheatmap - 'from' must be a finite number
by
Ram
44k
You'd see a different issue if the vector being analyzed contained character entries. This is clearly a problem with NA/NaN/Inf values in t…
Comment: How do I check if a DNA sequence of a gene is supported by RNAseq data?
by
GenoMax
142k
> bacterial genes containing phase variable short sequence repeats in their coding regions Can you describe this in a bit more detail? Are…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
jared.andrews07
★ 17k
This is exactly my point. You should not have gotten data to this state unintentionally, so you need to double-check what was done upstream…
Comment: Search within posts based on tags using the Biostars API
by
Ram
44k
Right, that's true. One way to do that would be to get the HTML output of https://www.biostars.org/tag/crispr/ and search it for the first …
Answer: Illumina EPIC v2 IlmnIDs and probe names
by
Papyrus
★ 2.9k
The ID code and the new features for the EPICv2 are explained in the Illumina documentation which you can access [here][1], in the `Infiniu…
Comment: Error with pheatmap - 'from' must be a finite number
by
Ram
44k
That answers half of what I asked you. Where's the output to the first command?
Comment: Error with pheatmap - 'from' must be a finite number
by
Ram
44k
You already have the response to the first one, so there was no need to include that.
Answer: Illumina EPIC v2 IlmnIDs and probe names
by
GenoMax
142k
The answer is provided in this Bioconductor thread: https://support.bioconductor.org/p/9156675/
Comment: Illumina EPIC v2 IlmnIDs and probe names
by
rna-seq_researcher
▴ 60
Hi, by any chance did you manage to solve this problem?
Comment: Confirmation required on how DiffBind generates union of regions (min. 1bp overl
by
GenoMax
142k
Tagging: https://www.biostars.org/u/10855/ <!-- this is -->
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