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How to get a list of genes information for a pathway?

I am interested in several lists of gens for plant hormonal biosynthesis and signaling pathway (e.g. ABA biosynthesis)

  1. Where can I get this information? What publicly available websites besides KEGG?

  2. How to download list of genes information for a pathway from KEGG (e.g ABA biosynthesis)

pathway
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updated by ATpoint ATpoint • written by WUSCHEL WUSCHEL

2 answers

I try to do all pathway-wise analysis via RECTOME as it does not require a subscription unlike KEGG which makes the latter sort of a blackbox. There seems to be a plant REACTOME. https://plantreactome.gramene.org/index.php?lang=en

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written by ATpoint ATpoint

You have biocyc.org which now requires a paid subscription but is excellent. Look into DBget as a mthod for downloading KEGG data.

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written by Asaf Asaf

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