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How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?

I am currently extracting sub-networks for my genes of interest using BioGrid network.

Instead of BioGrid, if I use the entire KEGG pathways as one gene interaction network I might get some interesting subnetwork/pathway information. Is there any such KEGG network available? Where can I download such KEGG pathway/genes information. (or) is there any such network available for reactome?

Thank you, Diwan

kegg network pathway
• 7,665 views • link
updated by Arnaud Ceol Arnaud Ceol • written by Diwan Diwan

2 answers

from this page you can dowload the whole reactome database: http://www.reactome.org/download/index.html

i don't think there is a whole metabolome file for kegg, it's not the way kegg is designed.

• 185 views • link
written by Giovanni M Dall'Olio Giovanni M Dall'Olio

Reactome provides interactions in tab-delimited files: http://www.reactome.org/download/index.html. You can also access this data through a psicquic web service (e.g. http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml)

• 126 views • link
written by Arnaud Ceol Arnaud Ceol

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