1 answer
See my answer to the following post:
C: Pathway annotation using sequence alignment
it gives KEGG links.
There are a lot of papers about ppi, try to search KEGG.
I’ve provided some necessary links in my post above:
But it is not quite clear whose proteins you study.
STRING may also be helpful.
There are some random examples below (I searched NCBI for “KEGG AND ppi”):
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022245/pdf/1745-6150-9-5.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851814/pdf/1752-0509-7-S2-S8.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4300222/pdf/pone.0116347.pdf
But this link https://omictools.com/ppis-category
is more general, it relates to many areas.
And look at the right panel - there are a lot of similar questions:answers there,
it may be helpful too.
Log in to answer this question.
-
Workflow for functional analysis of differential gene core modules: KEGG, GSEA, and GO enrichment
written by mizzika •
-
Extract KEGG pathway hierarchy
written by kamalika •
-
R KEGGREST to query and retrieve specific pathway names for kegg compound ids
written by sid5427 •
-
Locate Kegg Pathways from my network
written by saamar.rajput
-
Protein-protein interaction (PPI)
written by wonseongsik •
-
Shortest way between Protein and Pathway?
written by kerstin.ha •
-
How To Automatically Convert Ppi Subnetwork Into A Pathway?
written by Diwan
-
How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
written by Diwan
-
Is There A Web-Server Or Software That Can Create A Network Between Given Signaling Pathways?
written by biosystat •
-
Selecting Protein Protein Interaction Databases
written by Sudeep
Your question is not clear. Are you asking if one can extract an ENTIRE pathway from a PPI network? Or are you looking for even PARTIAL pathways from a PPI network - if so, what threshold would you use for inclusion or exclusion? Please restate your question more clearly.
Either entire or partial is fine.