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Identify Target Genes Of A Pathway

How can I get the list of target genes of a pathway. I want to get the target genes for the wnt signaling pathway using KEGG or DAVID. Or is there any other way to do this ? How do I do that ?

Thanks

kegg target
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updated by Larry_Parnell Larry_Parnell • written by Rima • Rima

What do you mean by target genes, do you mean all genes in a given pathway ?

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written by Khader Shameer Khader Shameer

so many question marks. Could you describe what you've done so far. Have you looked on the KEGG website?

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written by Russh Russh

"be nice". I removed all those question marks.

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written by Pierre Lindenbaum Pierre Lindenbaum

haha, sorry. I'm keen to know if rima would like to work in R or in some other system for the KEGG stuff. I suspect DAVID won't be possible.

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written by Russh Russh

@russH , the "be nice" was addressed to @rima :-)

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written by Pierre Lindenbaum Pierre Lindenbaum

DAVID have just released a web service interface for beta testing

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written by Pi • Pi

1 answer

I have used the KEGG Wnt signaling pathway genes but also like that from NetPath. You can obtain the NetPath Wnt signaling pathway at http://www.netpath.org/pathways?path_id=NetPath_8. The data come via HPRD.

Wnt signaling at KEGG = 149 genes

Wnt signaling at NetPath = 105 genes

64 genes are shared.

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written by Larry_Parnell Larry_Parnell

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