How to download function of list of genes from Uniprot, Pathways from KEGG, and Intereactomes ?

I have a list of genes (AGI). How can I download the information of all the genes at once from each website?

Functions from Uniprot,
Pathways from KEGG,
Interacting proteins from https://biocyc.org or https://string-db.org/network/

rna-seq gene

• 1,030 views • link

written 6.9 years ago by WUSCHEL

0 answers

No answers yet.

More posts like this

extracting Uniprot IDs for Kegg pathways
written 2.7 years ago by Assa Yeroslaviz

I would like to know if it is possible to extract the UniProt IDs for each of the KEGG pathways for specific organisms. From reading …
How to get a list of genes information for a pathway?
written 3.4 years ago by WUSCHEL

I am interested in several lists of gens for plant hormonal biosynthesis and signaling pathway (e.g. ABA biosynthesis) 1. Where can I get this information? …
How to cluster list of proteins with uniprot IDs by KEGG orthology groups
written 4.0 years ago by dlotzk •

I've got a list of proteins, complete with Uniprot IDs. I'd like to group them into orthology groups based on data from KEGG, but I …
StringDB get enrichment KEGG
written 8.3 years ago by Pin.Bioinf

Hello, I do my enrichment from a list of genes using stringdb. package. It returns the pathways , the pvalue and the number of hits …
Filter out the information from other organisms in STRING
written 8.4 years ago by Xiaokang •

I'm using STRING to get the interaction between some interesting genes in cod (Gadus morhua). On the page of "search", you can choose the organism …
How to extract known pathways from protein protein interaction network?
written 8.7 years ago by jack

Hi, Given physical protein protein interaction like String and KEGG pathway. I would like to know how many of KEGG pathways or signaling pathways exist …
how can I deal with proteins that belong to one gene if I want to I score my PPI ( Protein Protein …
written 9.8 years ago by AAhmed •

I have a list of interested differentially express genes. I integrated my gene with PPI network via using UniProt website http://www.uniprot.org. First, I convert Entrez …
How to combine Uniprot protein names and STRING interaction table for Cytoscape?
written 10.6 years ago by swarekwood •

Hello everybody! I'm new in bioinformatics and I'm starting new project. I have a STRING protein interaction network of some bacteria and Uniprot proteins list …
How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
written 13.2 years ago by Diwan

<p>I am currently extracting sub-networks for my genes of interest using BioGrid network. </p> <p>Instead of BioGrid, if I use the entire KEGG pathways as …
Generating A Gene Ontology Network For Cytoscape
written 13.7 years ago by jav.cdp •

<p>Hello. I need help using cytoscape. I have a list of genes of interest that I use as input in STRING 9.0. Then I download …