Exec format error
java -jar /path/to/trimmomatic-0.39.jar /path/to/20191205.B-2744XJ_3_1.fastq.gz /path/to/20191205.B-2744XJ_3_2.fastq.gz 0191205.B-JX2744XJ_3_1.trimmed.R1.paired.fastq.gz 0191205.B-JX2744XJ_3_1.trimmed.R1.unpaired.fastq.gz 0191205.B-JX2744XJ_3_2.trimmed.R2.paired.fastq.gz 0191205.B-JX2744XJ_3_2.trimmed.R1.unpaired.fastq.gz ILLUMINACLIP:TruSeq3-PE.fa.2:30:10 LEADING:3 TRAILING:3 MINLEN:36
-sh: 171: /path/to/20191205.B-2744XJ_3_1.fastq.gz: Exec format error
I've been trying this command and receiving Exec format error. Can someone please help me on this matter?
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I suspect there is a space or a cariage return in your original script. The shell tries to invoke the fastqs file if it was an executable.
What do you mean exactly? How can I fix it can you help me please?