Trimmomatic help needed trimming sequences
I am fairly new to using bioinformatics software through ubuntu so bear with me. I am trying to run Trimmomatic to trim single end sequences. I installed it with conda/anaconda.
I run this command
java -jar /marshall/anaconda3/share/trimmomatic-0.39-2.jar SE -threads 6 /Illumina_DNA_Reads/AMT0102_48_S1_R1_001.fastq.gz /Illumina_DNA_Reads/output_new.fastq.gz ILLUMINACLIP:/marshall/anaconda3/share/trimmomatic/TrueSeq3-SE.fa:2:30:10 LEADING:20 TRAILING:20 SLIDINGWINDOW:4:20 MINLEN:70
then I get the error
-bash: /home/marshall/anaconda3/bin/java: cannot execute binary file: Exec format error
any help would be appreciated
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what is the output of
thank you so much for taking the time to reply
this is what it out put