This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Annotation for specific id ( not all )

Hello I have a vcf file that I extract the data from it and make a machine learning to this data to identify the most important variants now I want to annotate some variants ( that I identify from Machine Learning ) how can I annotate just this variants ?

annotation
• 919 views • link
written by arwa.ahmad95 • arwa.ahmad95

1 answer

extract those variants with bcftools , annotate them, put them back with 'bcftools concat'.

• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

can u explain the steps .. what is the code for each step? I'm new in this field .. thanks

• 0 views • link
written by arwa.ahmad95 • arwa.ahmad95

Log in to answer this question.

More posts like this