how to deal with missing genotype data (gt) to do a machine learning
hi
I have a missing genotype data ./. and I want to encode genotype data to do machine learning algorithems
So I have 0/0 , 1/1 , 0/1 and ./. how can i encoded to do ML algorithems
thanks.
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German.M.Demidov
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arwa.ahmad95 •
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arwa.ahmad95 •
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What is the scientific question you're trying to answer ?
you can 1) naturally encode them as
NA,NAis a special value to encode missing information "NonAvailable", 2) impute the missing genotypes prior to any downstream analysis.how can I impute the missing genotypes? Is there any methods for imputing? Can u help me
yes, there are multiple posts on biostars, starting from this I guess
Genotype Imputation