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How to annotate the Bacterial genome VCF ?

Hi All, I have done De Novo assembly with 5 p.aeruginosa genomes, and i got some Variants in some target genes. Now i want to confirm those variants with using BWA and SamTools. BWA and SamTools were done with those 5 genomes, now i want to annotate my VCF file. How can i Annotate ? Suggestions ?

Thanks in Advance

snp next-gen sequencing gene genome
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written by k.kathirvel93 k.kathirvel93

1 answer

Hi , you can have a look on VEP there is files to annotate p.aeruginosa : http://bacteria.ensembl.org/info/website/ftp/index.html

Best

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written by Titus Titus

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