how convert hg19 to hg38

Hello, I found hg19 vcf file from Internet that I want to convet to VCF hg38 how can I do this ?

thanks

hg19 hg38

• 896 views • link

updated 2.5 years ago by Pierre Lindenbaum

• written 2.5 years ago by arwa.ahmad95 •

Converting VCF from hg19 to hg38

• 0 views • link

written 2.5 years ago by Pierre Lindenbaum

0 answers

No answers yet.

More posts like this

bcftools view remove (.) id
written 3.8 years ago by arwa.ahmad95 •

Hello I have a txt file that consists from CHROM,ID,POS, REF and ALT ( 48 variants ) I want to subset this txt with original …
Extract specific variants from vcf to annotate
written 3.8 years ago by arwa.ahmad95 •

Hi I have a txt file that contains some variants with specific columns Example from my txt file chr5 140673 rs12516245 A G I want …
Annotation for specific id ( not all )
written 3.8 years ago by arwa.ahmad95 •

Hello I have a vcf file that I extract the data from it and make a machine learning to this data to identify the most …
seperate vcf file to multiple files based on samples
written 4.2 years ago by arwa.ahmad95 •

Hello I hava a vcf that contains 20 samples ( in one file ) I need to seperate it to 20 files so, each file …
bed to vcf
written 4.9 years ago by rheab1230 •

Hello, I had a file in hg38 genome build. I use genome browser to do liftover to hg19 and got an output of bed file. …
Converting VCF from hg19 to hg38
written 5.4 years ago by DKA •

Hello everyone, May I ask how can I convert VCF from hg19 to hg38, I do not have any experience in bioinformatics, so, is there …
genotype matrix
written 5.4 years ago by arwa.ahmad95 •

Hello. my university give me a zip file that contain VCF and its tbi So, I have one VCF file that contains many variants for …
How to create vcf file with SNPs bed file and sorted bam file?
written 5.7 years ago by O.rka

I found this post but I'm still not sure how to do this: https://www.biostars.org/p/392006/ Here's my genome file and index: `../../db/genomes/human/GRCh38.p13/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna` `../../db/genomes/human/GRCh38.p13/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.fai` Here's my bam …
dbsnp in vcf format compatible with hg38
written 10.0 years ago by apocalyps52 •

Hello, I need to annotate the snps in a vcf file that I generated from hg38 reference. I try to use SnpSift for annotation however …
Convert BED(UCSC) to VCF
written 11.1 years ago by Ishtiaq Ahmad Khan

I am using liftOver to convert hg19-hg38. I made BED file from VCF to run liftOver. How can I convert output BED(HG38) to VCF format.