bed to vcf

Hello, I had a file in hg38 genome build. I use genome browser to do liftover to hg19 and got an output of bed file. Does anyone know of any software that can convert bed to vcf files.

liftover vcf bed

• 1,258 views • link

updated 5.1 years ago by brunobsouzaa 84 • | written 5.1 years ago by rheab1230 15

Check this post

• 0 views • link

written 5.1 years ago by brunobsouzaa 84

0 answers

No answers yet.

More posts like this

How to choose LiftOver chain file
written 3.0 years ago by ttom 23

I am trying to liftover a hg38 Whole Genome Sequenced VCF to hg19 VCF. Planning to use GATK Picard for this. However not sure which …
how to calculate %of missing genotype in vcf file
written 4.0 years ago by rheab1230 15

Hello, I have a vcf file which has missing genotype for certain samples. I want to find % of missing genotype in my vcf file …
difference between different field info in vcf file format
written 4.1 years ago by rheab1230 15

Hello, Does anyone know what the difference between these two field format in vcf file. GT vs DS. I know GT represent genotype information and …
vcf file analysis
written 5.1 years ago by rheab1230 15

Hello everyone, I have 22 vcf file for each chr. They were in genome build hg19 so I did a liftover and convert them to …
genome browser to check SNP genome build
written 5.1 years ago by rheab1230 15

Hello everyone, I have a file containing SNP. I want to take this SNP and go to genome browser to see which gene is close …
liftover using genome browser
written 5.1 years ago by priyanka 2

Hello everyone, I have a file which is hg38 build. I want to do a liftover and change it to hg19. I thought of using …
error related to annovar software
written 5.2 years ago by rheab1230 15

Hello everyone, I am trying to use annovar software to update my .vcf files with rsdi of dbSNP. I am getting some error. the code …
bed to vcf format conversion
written 10.3 years ago by prathikkv_1992 1

Hi Guys,new to biostarts and new to bioinformatics. I am trying to convert my output obtained from liftover of hg38 to hg19 which is in …
Convert BED(UCSC) to VCF
written 11.3 years ago by Ishtiaq Ahmad Khan 7

I am using liftOver to convert hg19-hg38. I made BED file from VCF to run liftOver. How can I convert output BED(HG38) to VCF format.
23andme: Convert Human Assembly Build 36 to Build 37
written 11.9 years ago by samorjoy 1

<p>I obtained a bunch of snp Array data from the 23andme website. The raw data output looks like <a href="http://dnaexplained.files.wordpress.com/2013/11/build-36.png">this</a>. I want to convert it …