how to calculate %of missing genotype in vcf file
Hello, I have a vcf file which has missing genotype for certain samples. I want to find % of missing genotype in my vcf file overall. Does anyone know any software which can give me the percentage? Thank you.
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William
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rheab1230 •
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rheab1230 •
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bcftools https://samtools.github.io/bcftools/howtos/plugin.fill-tags.html
INFO/F_MISSING Number:1 Type:Float .. Fraction of missing genotypes (all samples, experimental)
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Pierre Lindenbaum
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Duplicate of How to determine percentage missing genotypes in VCF/BCF?