replacing fasta headers
Hi,
I would like to modify the fasta headers from a file.
I would like to change:
>A0A0F2M4U6|A0A0F2M4U6_SPOSC Endoplasmic reticulum chaperone BiP OS=Sporothrix schenckii 1099-18 OX=1397361 GN=SPSK_04019 PE=3 SV=1
by
>A0A0F2M4U6
Thanks in advance!
• 1,249 views
•
link
updated
by
cpad0112
•
written
by
marcus.teixeira •
•
written
by
marcus.teixeira •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Creating Gene ID and Gene name colum from FASTA IDs
written by WUSCHEL
-
How to rearrange fasta headers
written by v.berriosfarias •
-
R extract gene names and protein descriptions from concatenated fasta headers
written by moritz.lasse •
-
Sort header from the multifasta sequnce file into only gene name
written by k.kathirvel93
-
combine fasta sequences in combination from two different files
written by shome •
-
How can i match between a file of IDs and a file of fasta sequences corresponding to the IDs using …
written by yasmineo52 •
-
How can i match between a file of IDs and a file of fasta sequences corresponding to the IDs using …
written by yasmineo52 •
-
removed entrie sequence include specific letters
written by Jason •
-
How do I extract Fasta Sequences based on a list of IDs?
written by a.rex
-
News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
written by Elisabeth Gasteiger
This is a frequently asked question. There are many threads on this topic.
A simple
cut -f1 -d "|" your.fa > new.fashould suffice if all fasta headers follow exactly identical pattern.