Hey guys! So i have 2 files: one contains a list of IDs (accessions numbers of Fasta sequences) and the other file contains the Fasta sequences corresponding to those IDs. I have a python script that works and matches he 2 files but only if the sequences file is short. When i change it with a longer file it doesn't give me the result that i'm looking for.

This is a sample of what the IDs file looks like:
A0A1B0GWI1
A2ABF9
A2ABF9
A2RUH7
ENSG00000255346
ENSG00000255346
ENSG00000255346
EBI-10021813
EBI-10021813

While the Fasta sequences file looks like this:

>tr|A0A1B0GWI1  |A0A1B0GWI1  _PLAFA Kinesin-like protein, putative OS=Plasmodium falciparum OX=5833 
GN=PocGH01_01021600 PE=3 SV=1
MHKRAYSESVALANRTLRRSDEKSFARELKAEDRIDEKQGHKLENVVVRIRKLEKNEESS
LHTDPNDKTTLYFNKDFSIEKYNFDMVFNENDNNEMIFKKIGGHLIVNNVCRGFKETVIT
YGQTGSGKTYTLFGSNKEYGIVYYFVYHLYKLCNFKNKKKTIYLSIYEILGDTLVDLISY
QNEKSIEFYTEEYYLKTIRYPYKVVNIKNYETAKKIIDTASSRSHAIIQFFVNISDSTRS
NGIETVRDYYGVLTLVDLVGCEREEFNTTKKEKSKDDKTSTKILNSSLTSLNKMLRKMQM
GNLDESDKRQSVLCKVLFNYIQKTCGVCLIFCFNPQMSQKSLTSSTLIMASECKKIKSKR
KQLIYVKSENKDAFFKKIANDSGKAGRCHGEYEEGRWDQNTSKQNGKDGKDGTVGTDGER
TREEKDDVSNNTTNASVIVVYANGERGNNVVNLSSEMGESEKYKSLKNIVREIIEEKGRE
EKKKNNLIQELKNDVVKLQKECAFWKRETHNYHNKLKVLNKNYIKMNEYLFNTLNNNSSN   
LCNSSFVKCENHTYGEWKSEHLAKKGNVLVHGGKYEQAKGGWRKDRQSNTEQGGCDIVHT
PHNAKDSDQKQTRSHHSPDLFTSDGTYNADNGIADSLYEKMETDNYFKKKNTTGVYQIDD
EYTLKREKSHNKLVPFDEKKKSEKECLLNNSPERKKYFRKVFTKELINYEQNSAHRENWE
KENDTPEHVREQRNDKKKPIYEKKKNSTIDAYNEHDTVFKKKNCVSNFVEKRENNDLNSH
QIVKNDVTVDIIRNKTNNSNEEPLLRNYQTNEDVDPSPYYNKMDTENVKRKNSEKGIIPT
DELTMNNAEATKMGSTLNIPSKSATMNYAPKSEALHMIPSEHFNHRHNVTVESLATKIKN
RILKSRSLSIAK   

>tr|A2ABF9_PLAFA Ribosome-recycling factor, putative OS=Plasmodium falciparum OX=5833 GN=RRF1 PE=4 SV=1
MVTISYSYCNAFIINSKCKRATYLFSGDSNVKRDLLTCWKRKYTSSNNRTKGDDYFSLHA
HKKKKSKKADAVEKMLKKKIITIREPNLNANEGNYSGVDSNHLVKKEYDEEHTEIANVPF
EKGKNKNDKNKKGIAKEEKQNSSFTLKNYKIRKNVANELVKTEENLEKSTAQSTAQSTAQ
STAKSTEKNTKKIFINALQNDDDITDTSSEEETTDETTEATEATEATEATEATEATEATE
ATEEDLHNLSSICEEKMNSVYNYIKKESYRFNINNVSSVMFEDEKIKINERIYKIKHICH
IKMKENLFTLTPYDPYFVNFIYIHLKKEYNEINVYIKNNSVYILIPPISENLKNELLIKI
KNKIENSKIILRNIRKNILHKLDILKKKISKDIYFKQKNYIQSLHDKTKKKIEHIFTELK

>tr|A2ABF9|A2ABF9 _PLAFA Uncharacterized protein OS=Plasmodium falciparum OX=5833 GN=PocGH01_12014600 PE=4 SV=1
MSFKEKLYRRKKCNEVVYEAYGKIDQEVKTSEKGVKGKNETEENLAKKLPFFLNKKKNEN
TCDLLMNVSEHDEDVYFISKTIKTYLNLNEPVRIRLSLLYNTAQYDLFRNYLIAIRDMYR
GIFALKVTRNGNIKKKKILFTTYNINIIGTWTRKIILYDEVTQVYISNSCTPELHIFEKK
FEDYVNRKNYIVIRTLYRDYSFLFLRDDEIVMKIKKKSAMGKIKHLLKKNELRGELKGEL
KNELIFKGHPGSELQDNTISTTGENCEDHLKNTHKGKLAMKDKIQDINATAQGFKFFFLR
ALRNSKTQSVDIDNEDVREMLKKNNMIQFDKYDFKNQKINSLFLFLQIMLDLCGPEIWFT
SKFDEILFTHLN

The output should be like this:

A0A1B0GWI1
>tr|A0A1B0GWI1|A0A1B0GWI1  _PLAFA Kinesin-like protein, putative OS=Plasmodium falciparum OX=5833 
GN=PocGH01_01021600 PE=3 SV=1
MHKRAYSESVALANRTLRRSDEKSFARELKAEDRIDEKQGHKLENVVVRIRKLEKNEESS
LHTDPNDKTTLYFNKDFSIEKYNFDMVFNENDNNEMIFKKIGGHLIVNNVCRGFKETVIT
YGQTGSGKTYTLFGSNKEYGIVYYFVYHLYKLCNFKNKKKTIYLSIYEILGDTLVDLISY
QNEKSIEFYTEEYYLKTIRYPYKVVNIKNYETAKKIIDTASSRSHAIIQFFVNISDSTRS
NGIETVRDYYGVLTLVDLVGCEREEFNTTKKEKSKDDKTSTKILNSSLTSLNKMLRKMQM
GNLDESDKRQSVLCKVLFNYIQKTCGVCLIFCFNPQMSQKSLTSSTLIMASECKKIKSKR
KQLIYVKSENKDAFFKKIANDSGKAGRCHGEYEEGRWDQNTSKQNGKDGKDGTVGTDGER
TREEKDDVSNNTTNASVIVVYANGERGNNVVNLSSEMGESEKYKSLKNIVREIIEEKGRE
EKKKNNLIQELKNDVVKLQKECAFWKRETHNYHNKLKVLNKNYIKMNEYLFNTLNNNSSN   
LCNSSFVKCENHTYGEWKSEHLAKKGNVLVHGGKYEQAKGGWRKDRQSNTEQGGCDIVHT
PHNAKDSDQKQTRSHHSPDLFTSDGTYNADNGIADSLYEKMETDNYFKKKNTTGVYQIDD
EYTLKREKSHNKLVPFDEKKKSEKECLLNNSPERKKYFRKVFTKELINYEQNSAHRENWE
KENDTPEHVREQRNDKKKPIYEKKKNSTIDAYNEHDTVFKKKNCVSNFVEKRENNDLNSH
QIVKNDVTVDIIRNKTNNSNEEPLLRNYQTNEDVDPSPYYNKMDTENVKRKNSEKGIIPT
DELTMNNAEATKMGSTLNIPSKSATMNYAPKSEALHMIPSEHFNHRHNVTVESLATKIKN
RILKSRSLSIAK   

A2ABF9
>tr|A2ABF9_PLAFA Ribosome-recycling factor, putative OS=Plasmodium falciparum OX=5833 GN=RRF1 PE=4 SV=1
MVTISYSYCNAFIINSKCKRATYLFSGDSNVKRDLLTCWKRKYTSSNNRTKGDDYFSLHA
HKKKKSKKADAVEKMLKKKIITIREPNLNANEGNYSGVDSNHLVKKEYDEEHTEIANVPF
EKGKNKNDKNKKGIAKEEKQNSSFTLKNYKIRKNVANELVKTEENLEKSTAQSTAQSTAQ
STAKSTEKNTKKIFINALQNDDDITDTSSEEETTDETTEATEATEATEATEATEATEATE
ATEEDLHNLSSICEEKMNSVYNYIKKESYRFNINNVSSVMFEDEKIKINERIYKIKHICH
IKMKENLFTLTPYDPYFVNFIYIHLKKEYNEINVYIKNNSVYILIPPISENLKNELLIKI
KNKIENSKIILRNIRKNILHKLDILKKKISKDIYFKQKNYIQSLHDKTKKKIEHIFTELK

A2ABF9
>tr|A2ABF9|A2ABF9 _PLAFA Uncharacterized protein OS=Plasmodium falciparum OX=5833 GN=PocGH01_12014600 PE=4 SV=1
MSFKEKLYRRKKCNEVVYEAYGKIDQEVKTSEKGVKGKNETEENLAKKLPFFLNKKKNEN
TCDLLMNVSEHDEDVYFISKTIKTYLNLNEPVRIRLSLLYNTAQYDLFRNYLIAIRDMYR
GIFALKVTRNGNIKKKKILFTTYNINIIGTWTRKIILYDEVTQVYISNSCTPELHIFEKK
FEDYVNRKNYIVIRTLYRDYSFLFLRDDEIVMKIKKKSAMGKIKHLLKKNELRGELKGEL
KNELIFKGHPGSELQDNTISTTGENCEDHLKNTHKGKLAMKDKIQDINATAQGFKFFFLR
ALRNSKTQSVDIDNEDVREMLKKNNMIQFDKYDFKNQKINSLFLFLQIMLDLCGPEIWFT
SKFDEILFTHLN