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to download sequence using fastq-dump

hey, I am trying to download sequence using fastq-dump , but getting error again and again that table not found while opening manager within database module can anyone give the example for writting the syntax for downloading complete sequence using command fastq-dump...

fastqdump
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written by muskan-1889018 • muskan-1889018

Hi muskan-1889018 ,

as general rule you should post the command line used to download and convert SRA files into fastq files and the error message. Without these information we can't really help you

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written by andres.firrincieli andres.firrincieli

Commnd line fastq-dump -A accession number Fastq-dump Error 2.7.1 table not find while opening manager Can you tell what is wrong in command line?

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written by muskan-1889018 • muskan-1889018

Commnd line fastq-dump -A accession number Fastq-dump Error 2.7.1 table not find while opening manager Can you tell what is wrong in command line?

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written by muskan-1889018 • muskan-1889018

1 answer

Don't bother with that terrible tool. Visit sra-explorer.info, search for the datasets you need and obtain direct fastq download links.

sra-explorer : find SRA and FastQ download URLs in a couple of clicks

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written by ATpoint ATpoint

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