Error while converting sra to fastq
I have been trying to convert an 'sra' file to 'fastq' format using the SRA Toolkit. I used the following command
fastq-dump SRR8357214
I got the following error " fastq-dump.2.10.8 err: directory not found while opening manager within virtual file system module - failed SRR8357214"
Does anybody know a solution? Thank you so much in advance.
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gunavaran.15 •
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This has been asked many times before, please use google and the search function.
Alternatively try: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
Have you checked the
vdb-config(vdb-config -i) file?