TWAS-hub interpretation: positive and negative values

Hi All,

I am confusing about how to understand the value from TWAS-hub. For example, I notice SORT1 shows -5.8 in LDL cholesterol. How to understand this -5.8 value?

Thanks.

Fiz

enter image description here

hub twas

• 709 views • link

written 5.4 years ago by Friyunnwoo •

0 answers

No answers yet.

More posts like this

Bismark M-bias plot spikes in R2
written 1.8 years ago by hj •

![enter image description here][1] ![enter image description here][2] [1]: /media/images/668044d0-6d79-4fbb-b25e-c5a30ab0 [2]: /media/images/e37abb35-262e-47ed-82f8-7a672810 I don't understand why the fluctuations are so severe in Read2, while seems …
Understanding IGV
written 1.8 years ago by zizigolu

Hi I have targeted sequencing (WGS) I have uploaded bam and vcf file for sample; From these screenshot which one shows/support this mutation ![enter image …
Cannot access NCBI - Error 500
written 2.7 years ago by Paxton •

I am new and just started working on my first bioinformatics project. But idk I cant access any website on NCBI. It just shows Error …
how to solve the problem "Invalid character (+) in sequence"
written 3.0 years ago by alice005201314 •

When I annotated the metagenomic data with args_oap_3.2.3, the following error was reported. ![enter image description here][1] I found the contents of the line in …
How to remove batch effect from TCGA RNA-seq data?
written 3.1 years ago by Khas-erdene •

Hello, I have input of 23000 genes of data table and run blockwise module. It shows that one module has 17000 of genes clustered. I …
Seraut JackStrawplot PC1
written 3.4 years ago by Song •

Hi all, When I draw a jackstrawplot, I run into a same problem that the PC1 has non-significant p-value like this. How can I interpret …
How to make a TSS enrichment plot in ATAC-seq analysis?
written 4.1 years ago by Dan •

How to make a TSS enrichment plot in ATAC-seq analysis, which shows the TSS enrichment of nucleosome-free fragments, mono-nucleosome fragments, and di-nucleosome fragments? ![enter image …
DNA methylation analysis package "Minfi"
written 4.8 years ago by soyeon •

Hi , I'm studying about minfi package. I don't understand the bisulfite conversion results. And beta-value,M-value too. How should I interpret the data for the …
Sequence Duplication Levels
written 4.8 years ago by Elizaveta •

How to fix high level of sequence duplication?![enter image description here][1] ![enter image description here][2] [1]: /media/images/c0587e85-f87c-4be4-b024-29d4345f [2]: /media/images/9662efcb-e505-4ce3-a8dd-4112e676
How can I add text label outside the tree in iTOL ?
written 5.3 years ago by anran04100 •

here is the tree in iTOL ![enter image description here][1] now I've got a txt file with information in it ![enter image description here][2] How …