More posts like this
-
ROC Curve
written by shabbas12 •I need assistance in plotting ROC curves for six tools implemented on TP53 data. The TP53 database contains 40 pathogenic and 36 benign SNVs as …
-
how to tell if the JackStrawPlot is good
written by alwayshope •Dear guys, Could you help guidance if the JackStrawPlot is good? Quite different from the tutorial... Thanks a lot! ![enter image description here][1] [1]: /media/images/dc8f1ae5-aba9-4c77-a602-4c4a3efe
-
Interpreting SnpEff output plots
written by Alireza •Hi all. How can we interpret the following bar plot? Why are two exon bars shown in the bar plot? ![enter image description here][1] ![enter …
-
peptide sequence (already know protein ID ) to domain match
written by 16622080827 •I have a list of peptide sequences which the IDs of these peptides belonging to are known. The list is shown as this: ![enter image …
-
Is it possible to add significant stars besides oncoprint ?
written by Lillian •I have create oncoPrint by `Complexheatmap` package in R like this: ![enter image description here][1] I'm wondering is it possible to make annotation of significant …
-
Make a line chart flatter
written by 3095916029 •I used R package "ggplot2" to draw a line chart. Now i want to make it flatter. Is there any data processing or graphical processing …
-
Why my `Percent duplicates` in a shallow sequencing is too high?
written by 631079064 •I made a 10x snATAC-seq library and do a shallow sequencing of 5G. Typically, the `Percent duplicates` is less than 20%. However, my library had …
-
My PCA plot looks good but i don't have differentially expressed genes
written by druggable •Dear All, I have the following PCA plot from microarray data: ![enter image description here][2] It looks quite good because the green samples and red …
-
Is the current R version (4.1.2) are not suitable for the packages related with TCGA
written by nonaddldy •I cannot install series of packages related with TCGA, no matter through BiocManager::install or install.packages ![enter image description here][1] ![enter image description here][2] ![enter image …
-
Sequence Duplication Levels
written by Elizaveta •How to fix high level of sequence duplication?![enter image description here][1] ![enter image description here][2] [1]: /media/images/c0587e85-f87c-4be4-b024-29d4345f [2]: /media/images/9662efcb-e505-4ce3-a8dd-4112e676